Shewanella sp. Pdp11: AYJ58_05645
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Entry
AYJ58_05645 CDS
T11329
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shep Shewanella sp. Pdp11
Pathway
shep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ58_05645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shep03019
]
AYJ58_05645
03009 Ribosome biogenesis [BR:
shep03009
]
AYJ58_05645
Enzymes [BR:
shep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AYJ58_05645
Messenger RNA biogenesis [BR:
shep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYJ58_05645
Ribosome biogenesis [BR:
shep03009
]
Prokaryotic type
rRNA helicases
AYJ58_05645
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AUD59005
LinkDB
All DBs
Position
complement(1296455..1298377)
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AA seq
640 aa
AA seq
DB search
MSSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSER
QLALFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLE
VENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE
RSTNSRISPMKIPSPETVAERRLSRLGEQLAETISGDLDFMKEAVAQLCQQLEVDSDLLA
AALLQQVQQERPLQLPVIQERVRDERSERTERSDRGSDRNDRGGERGERRSREPRPMPAS
LGSAEALKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTV
DLPDGMPKDVLQHLRKVRVCGKPLNIRKAGDQVFVDSGRSARSDRPAGDRKPRGDRPTGD
RPAGDRKPRAASTGDKPFADRKPRADKPAGERKPRKPRED
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgatgaaagaactttccgtgaactcggcttatccgagaatttgttgcgtgct
cttgacgagctaggttatgaaaaaccaacgccaatccagtcagccagtatcgacccactt
atggctggcaaagatattttaggtcaagcgcaaacaggtacaggtaaaactggcgccttc
gctttaccactactaaacaaagtgaccagccaaaccacgccgcaaattttagtattagcg
ccaacacgtgagttagcggttcaggttgctgaagcgttcagcagctatgccaaatttatg
aaaaatttccacgtactgccaatttacggcggtcaaagcatgcaacaacagttgaatgca
ctgaaacgtggtccacaagttatcgtgggtacgcctggtcgtgttatggaccacatgcgt
cgcggtactttgaaactcgactcattaaaagcactcgtgctcgatgaagccgatgaaatg
ttaaaaatgggcttcatcgatgatatcgaatggatccttgagcacacgccaagcgagcgc
caactggcgttattctctgccactatgccagagcaaattaagcgtgttgcaaaccaacac
ttacgcagcccagtgcatgttcgtattgaatcaagccaaacaacggttgagtcaattgag
cagcgtttcgtgcaagtatcacagcacaacaaactcgaagctttagtacgcgtattagaa
gttgaaaacactgaaggtgtaatcatattcgtgcgtactcgtaactcatgtgttgagtta
gccgagaagttagaagcccgcggttatgcttcatcaccactacatggtgacatgaaccag
caagcccgtgagcgtgcagttgaccaactgaaacgtggcaagttagacatactgatcgcg
actgacgttgcggcccgtggtcttgacgttgagcgtatcggtcacgttgtgaactacgat
attccgtatgatgccgaagcttatgtacaccgtattggccgtacaggccgtgctggccgt
actggtatggcgatcctgtttgtgacaagccgtgaaatgcgcatgctgcgcacgatcgag
cgttcaactaacagccgaatttctccaatgaaaatcccaagcccagagactgttgcagaa
cgtcgtctatctcgtttaggtgagcaattggctgaaacaatcagtggcgatttagatttc
atgaaagaagctgttgcgcaattatgccaacagttagaagtcgatagcgatctgctagct
gcagcattattacagcaagttcagcaagaacgtccactgcaattacctgtgattcaagaa
cgtgttcgtgatgaacgcagtgagcgcactgaacgtagcgaccgcggcagtgatcgtaat
gaccgtggtggtgagcgtggcgaacgcagaagccgcgaaccgcgtccaatgccagccagc
ttaggctcagctgaagcgttgaaagacaacccagatttgaaaatgtgccgttacgtgatc
gacgtaggtcgtgagaatggtgtaggtgtgggtaacatcgttggcgctatcgcgaacgaa
gctaacatcgacagccgttacattggcgcaatccaactttatgatgcagtgaccactgtt
gacctaccagacggcatgccaaaagacgtgttacagcacctacgtaaagtacgtgtttgt
ggcaagccattgaacatccgcaaagctggcgatcaagtatttgttgattcaggccgtagc
gcgcgttcagaccgccctgctggtgaccgtaaaccacgtggcgatcgtccaacgggtgac
cgcccagcgggtgatcgtaagcctcgcgctgcgtcgactggtgataagccatttgctgac
cgcaaacctcgtgcagacaaacctgccggtgagcgtaagccacgtaaaccacgtgaagac
taa
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