Shewanella sp. Pdp11: AYJ58_06140
Help
Entry
AYJ58_06140 CDS
T11329
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
shep Shewanella sp. Pdp11
Pathway
shep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ58_06140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shep03019
]
AYJ58_06140
03016 Transfer RNA biogenesis [BR:
shep03016
]
AYJ58_06140
Enzymes [BR:
shep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AYJ58_06140
Messenger RNA biogenesis [BR:
shep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYJ58_06140
Transfer RNA biogenesis [BR:
shep03016
]
Prokaryotic type
tRNA degradation factors
AYJ58_06140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
TFIIE_beta
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
AUD59094
LinkDB
All DBs
Position
1416937..1419360
Genome browser
AA seq
807 aa
AA seq
DB search
MIKDPHFEREQDKYENPIPSREYIIDYLRSQKSPITRDSIAAALNIQEEEQLEALRRRLR
AMERDGELVFTRGQSYGLPEKMDLIPGTVLGHREGFGFFKPDEGGDDLFISNRDMLMYFH
GDKVLAQKAGTDRRGRREARLVRLIQPRSAAIVGRYHVDSGMAFVIADDKRITQEILVAN
EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSPV
IEKKLRRIPDEVTDADKVGRVDLRHLPLVTIDGEDARDFDDAVYAEKKAGGGWRLWVAIA
DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTVS
AKGKLSGYKFYPAVMYSHARFTYTQVAEMLEGGPIAPEHEALFPHLQCLQSLYLALDEQR
AERGAIAFETMETQFIFNEQRKIDKIVPRGRNQAHKIIEECMILANVSAAKFVKKHKGEV
LYRVHEAPSEQKLANFKEFLAERGLTMPGGLEPTPSDYQNVMLQIADRPDAELIQVMLLR
SMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKERGEATEKWTQDG
GYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTSFGLF
VRLNELFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAVNLDDRQI
DLVMLGDDGKGGKRKASASRDKPMTARERVNREGAKQGKAGKTAASSAKAETGKTKPKAK
AGTKAKKTAVKDPAKKPKAAKRSTRKK
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagaccctcattttgagcgtgaacaggataagtacgaaaaccctatcccaagc
cgtgagtatattatcgattacttacgttctcagaaatcacctatcactcgtgacagtatt
gctgcggcgttaaacatccaagaggaagaacaacttgaggccctgcgccgtcgcctacgt
gcgatggaacgtgatggcgaacttgttttcacccgtgggcagagctatggcttgcccgag
aaaatggatcttatccccggcacagtgctcggacacagagaaggcttcggctttttcaaa
cccgatgaaggcggtgatgacttatttatttcgaaccgcgacatgctgatgtatttccac
ggtgataaagtgctggcgcaaaaagcaggcacagatcgtcgtggtcgtcgcgaagcacgt
ttggtgcgtttgatccagccgcgcagtgctgcaattgttggccgttatcatgttgatagc
ggtatggcatttgtcattgccgatgataagcgtataacccaagaaatcttagtcgcgaat
gaagaccgcaacggcgcccgtcaaggcgatgttgttgtggttgaattaacgcgtcgccca
ggtcgttttgttaaggctgcgggtaaagtgactgaagtgcttggtaagcaaatggcaccg
gggatggaaatcgaaatcgccctgcgtaactatgacttaccccatacttggtcaccagtg
atcgagaagaaactgcgccgaattcccgatgaagtgaccgatgccgataaagtcggccgt
gtggatttacgtcatctgccattagtgactatcgacggtgaagacgctcgcgattttgac
gatgccgtgtatgcggagaaaaaagccggtggcggctggcgtttatgggttgcgattgcg
gacgtcagttattatgttcgcaccgattcagccttagatactgaagcgcgtgcccgtggt
aactcagtgtatttcccatcgcaagtgatccctatgctgccggagaaaatctccaacggc
ctatgttcgcttaatcctcacgtcgaccgtttatgtatggtcgccgagatgacagtgtct
gccaaaggcaagttgtcgggttataagttttatccggctgtgatgtattcccatgcccgt
tttacttatacccaagtggcggagatgttagaaggcggccccattgcgcctgagcatgaa
gccttgttcccgcatttgcagtgtttacagtcattgtatttagcgctcgatgagcaaaga
gccgagcgtggtgcgattgcgtttgaaaccatggaaacgcagttcattttcaatgagcag
cgcaagattgataaaatcgtgccgcgtggccgtaatcaagcccataaaatcattgaagaa
tgtatgattttagccaacgtttctgcagctaagtttgtgaagaaacacaaaggcgaagtc
ttgtatcgtgtgcatgaagcgccatccgagcaaaaattggcgaactttaaagagttcctt
gctgagcgtggtttgactatgcctggcggacttgagccaacgccgtccgattatcagaac
gtgatgctgcaaattgccgaccgccctgatgctgaacttatccaagtgatgttgctgcgc
tctatgcgtcaggccatttacactccggataacgaaggtcatttcggtctagccttagaa
gaatatgcgcattttacctcgcccattcgccgttatccggatctagtgttacatagagtg
atccgatatttactggcgaaggaaagaggcgaagccacagaaaagtggacgcaggatggt
ggttatcactatcaactcgatgagctcgaccaattgggcgaagagtgttcgaccacagaa
cgtcgtgccgatgaagcgactcgcgatgttagcgattggctcaagtgcgagtttatgcaa
gatcacgtcggtgatacctttgaagctgtgattgcctcagtgacgagctttggtttgttt
gtgcgcttaaatgaactgtttatcgatggcttagtgcatatctcaagtctaggtagcgat
tactaccaattcgatcctatgcgtcaacgccttatcggtgagcatacaggccaagtctat
caagtgggcgatcctgtgacggttaaggtcgctgcagttaacttagatgacagacagatt
gatttagtcatgctgggtgatgacggcaaaggtggtaagcgtaaagcatctgccagccgt
gataagccgatgactgcccgtgagcgcgttaatcgtgaaggcgctaagcaaggcaaagcg
ggtaaaaccgcggcatctagcgccaaggctgaaacaggcaaaaccaaacctaaggctaaa
gcgggcactaaagcgaaaaaaacagcagtaaaagatccggctaaaaagccaaaagccgct
aagcggagcacgagaaagaaataa
DBGET
integrated database retrieval system
