Shewanella sp. Pdp11: AYJ58_06350
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Entry
AYJ58_06350 CDS
T11329
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
shep Shewanella sp. Pdp11
Pathway
shep03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
AYJ58_06350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shep03019
]
AYJ58_06350
03009 Ribosome biogenesis [BR:
shep03009
]
AYJ58_06350
Messenger RNA biogenesis [BR:
shep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYJ58_06350
Ribosome biogenesis [BR:
shep03009
]
Eukaryotic type
Pre-60S particles
RNases
AYJ58_06350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AUD59135
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All DBs
Position
1451761..1452375
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AA seq
204 aa
AA seq
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MEQFFLFGDLETGGLNGRLDNGMLGMEYYPIFELAFIVTDSELNQVGEALHIVVHQDDEH
IARSHEWAIDVHTKSGLLAAVRASSVSLAQAEQMVLEHLKALGIPKHDRKAKTGVVFAGN
SIMLDRSFIMCQMPELHEYMHYRQLDISAIGLAARAWAPEVERNAIKAKQYQHEALADIR
ESIAELKYYRDELFGCEISSLSIG
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atggagcaattctttttgtttggtgatttagaaacgggtgggctgaacggccgcttagac
aatgggatgctgggtatggagtattaccctatctttgagctggcctttatcgtgactgat
agtgagttaaaccaagtgggtgaagcgctgcacattgttgtgcatcaagacgatgaacac
attgcaaggtcacatgagtgggcgatagatgtgcatactaagagtgggttgttagctgct
gttcgtgcctcatcagtatcgttagcacaggctgagcagatggtactcgaacacctgaaa
gcactgggaatacctaagcatgaccgtaaagctaagactggtgtggtgtttgcgggtaac
tcaatcatgcttgatcgttcgtttatcatgtgccaaatgcctgagcttcatgagtacatg
cattacaggcagctagacatatcagcaatagggctcgcagctagagcttgggcgcctgag
gtagagcgtaatgcgattaaggctaagcagtatcagcatgaagccttagccgatattcgg
gagtcgatagcggaactcaagtactatcgcgacgagttgtttggttgcgaaatatcatct
ttgtcaataggttag
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