KEGG   Shewanella sp. Pdp11: AYJ58_06540
Entry
AYJ58_06540       CDS       T11329                                 
Name
(GenBank) DNA topoisomerase IV subunit B
  KO
K02622  topoisomerase IV subunit B [EC:5.6.2.2]
Organism
shep  Shewanella sp. Pdp11
Brite
KEGG Orthology (KO) [BR:shep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shep03032]
    AYJ58_06540
   03036 Chromosome and associated proteins [BR:shep03036]
    AYJ58_06540
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:shep02048]
    AYJ58_06540
Enzymes [BR:shep01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     AYJ58_06540
DNA replication proteins [BR:shep03032]
 Prokaryotic type
  DNA Topoisomerases
   AYJ58_06540
Chromosome and associated proteins [BR:shep03036]
 Prokaryotic type
  Chromosome partitioning proteins
   Other chromosome partitioning proteins
    AYJ58_06540
Prokaryotic defense system [BR:shep02048]
 Toxin-antitoxin system (TA system)
  Type II TA system
   Type II TA system related factors
    AYJ58_06540
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C HATPase_c Toprim HATPase_c_3 TOPRIM_C
Other DBs
NCBI-ProteinID: AUD59171
LinkDB
Position
1486544..1488430
AA seq 628 aa
MTNQYTSDAIEVLNGLDPVKRRPGMYTDTSRPNHLGQEVIDNSVDEALAGHATKIEVVLH
TDNSLEVTDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVN
ALSRRVEVTVRRDGQVYDIAFENGFKVEELRPTGTCGRRNTGTRVHFWPDASYFDSANFS
NSKLIYLLRAKAVLCPGLRIKFTNKQTNEVHEWFYESGLTDYLKAAIGDNLRLPDEPFVG
CFKGQLEAADWAITWLPEGGESIGESYVNLIPTPLGGTHVNGFRQGLLESMREFCEFRNL
IPRGIKLSPEDIWDRAAFILSVKMQEPQFAGQTKEKLSSRQCAAFVSGVVRDAFSLWLNS
NTELAESLAEMCINNAQSRLKAAKKVARKKVTSGPALPGKLTDCSGQDPMRGELFLVEGD
SAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISVAIGCDPDSSDISEL
RYGKICILADADSDGLHIATLLCALFLKHYRILVEQGHVYIAMPPLFRIDIGKEVYYALD
EAERVGILDRIAAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDIEETD
ALMDMLLAKKRSPDRKNWLEDKGDMALL
NT seq 1887 nt   +upstreamnt  +downstreamnt
atgacgaatcaatacacctctgacgccattgaagttctcaacggactcgatcctgttaaa
cgccgtccaggtatgtataccgacacctccagaccaaatcatttgggccaagaggtcata
gataacagtgtcgatgaagcattggcgggtcacgcgaccaaaattgaagttgttctacat
acagataactccctcgaagtcaccgatgatggccgtggtatgccggtggatatccaccca
gaagaaggcattcctggggtcgagttaatcctaaccaaattgcatgccggcggtaaattt
tcgaataaaaactaccagttctctggcggtttgcacggtgtggggatttcggtcgttaac
gcgctgtcgcgccgtgtagaagtgacagttcgccgtgatggtcaagtgtatgatatcgca
tttgaaaatggctttaaggttgaagagttacgcccaacggggacctgtggtcgtcgcaat
actgggactcgagtgcatttttggcccgacgccagctattttgattcggctaacttttct
aattcaaaactgatttatctgctgcgggctaaagcggtattgtgcccaggtttacggatc
aaattcaccaacaaacaaacaaatgaagtccatgaatggttctatgaaagcggcctaact
gattatttgaaggcggcgattggcgacaatttaaggttgccagatgagccgtttgtcggt
tgttttaagggccagctagaagccgctgattgggccattacttggctgccagaaggcggt
gaatccattggcgagagttatgttaacttaattccgactccactcggtggtactcatgta
aatggtttccgccaaggtttattggagtcaatgcgcgaattttgtgagttcagaaactta
attccccgcggtattaaactttcacccgaagacatttgggatcgcgccgcatttattttg
tcggtgaagatgcaagaaccgcaatttgctggccaaaccaaagaaaagctttcgagccgc
caatgcgctgcttttgtgtctggtgttgtgcgtgacgcattctcactctggttgaactca
aataccgagttagctgaatccttagccgaaatgtgcattaataacgcccagagtcggtta
aaggccgctaaaaaggtcgcccgtaaaaaggtgacttctgggcctgcactaccgggtaag
ctaacggactgtagtggccaagatccgatgcgcggagagttattcctcgtggaaggggat
tctgcgggcggtagtgcgaaacaggcccgcgatcgcgagtttcaagccattatgccgctg
cgtggcaaaatcttaaacacctgggaagtcgatgcttcacaagtgttagcctcacaggaa
gtccatgatatttcggtcgcaattggttgcgatcccgatagcagtgatatctctgagctg
cgttatggcaagatttgtatccttgcggatgctgactccgacggattgcacattgctacc
ttgttatgcgcgctatttttgaagcattaccgtatcttggttgaacaggggcatgtgtat
attgccatgccgccactgttccgtatcgatatcggcaaagaggtgtattacgccttagat
gaagccgaaagagtgggaattttagatcgcattgccgctgagaataaaaagggcaaggta
caagtaacccgctttaaaggcttgggtgagatgaatcctttacaacttcgtgaaacaacg
atggatccgaacacccgtcgtttagtacagttgacaatagatgatatcgaagagacagat
gctttgatggatatgttgctcgctaagaagcgttcgccggaccgtaaaaactggctcgaa
gataagggtgacatggctttactttaa

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