Shewanella sp. Pdp11: AYJ58_06855
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Entry
AYJ58_06855 CDS
T11329
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
shep Shewanella sp. Pdp11
Pathway
shep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ58_06855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shep03019
]
AYJ58_06855
Enzymes [BR:
shep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
AYJ58_06855
Messenger RNA biogenesis [BR:
shep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AYJ58_06855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Gad2
Motif
Other DBs
NCBI-ProteinID:
AUD59227
LinkDB
All DBs
Position
complement(1572082..1573623)
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AA seq
513 aa
AA seq
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MVYDSRQIFNQITDHISRCPIFRRISQFCKQLFEDAPKTTAPTPAQIEPTTPEQSSGALS
LELVPRDAHTISRKQISENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNAT
PEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFRGHHGESNEKVSKANAEGRLLRDNV
YGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRML
RAVRFATKLNMGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYK
LFAPLFPQVAALLKDDPKGTTMKMVQAIMKSTDQRVNEDKPVTPSFFYAALLWYPLRQRA
EDIAVESGLTLYDAFFAAMGDVMEQQCQTISIPRRFSTPAKDIWQLQLRFDRSQGTRAFK
LMEHPKFRAAYDLLLLRGEVEAGNVAKSAAWWQQFVEADETERLAIARSGSKSPNRNRNA
TQRRRRPRAPNADGSAPTSTPKASGTPKAKAAE
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
ttggtatatgatagccgccagatttttaatcaaataacagatcatatttcgaggtgtccc
atttttcgccgtatcagccaattctgcaaacagctatttgaagacgcgcctaaaacgacc
gctccgactccagctcagattgaaccaacaacgcctgaacaaagttctggagcgttaagc
ttagagttagtgccaagagatgcccataccatctcgcgcaaacaaatcagcgaaaatgcc
cttaaggtgttatacagactgaataaatcaggttttaaagcctatttagtcggcggcggt
gtacgcgatttactcttagggattgaaccgaaagatttcgacgtagtgaccaatgcgaca
ccggaagaaatcaaaaaactgttccgcaactgccgagtcgttggccgtcgtttccgtctg
gcccatattgttttcggccgcgatgttatcgaagtggcgacctttcgtggtcaccatggc
gaaagcaatgagaaagtctctaaagccaatgccgaagggcgtttgctacgtgataacgtt
tatggcgaaatcgacgaagatgccgagcgccgcgactttaccgtcaatgccctctattac
gatatcagcgattactcgatccgcagctacggcggcggtatggccgatctcaaagcgggt
acgttgagattaattggcgatcctgaaacccgttaccgtgaagatccggtgcgtatgtta
agggcggtgcgtttcgccactaaactcaacatgggtatcgaaacagtaacagctgcgccg
attaaacaattagcgccactgctaaaagatattcccgcagcgcgtatgtacgaagaagtg
ctgaaactcttctttgcaggcaaagccttagccaacttcgaactgatgcaagaatacaag
ctattcgcgccgctgtttccacaagtggccgctctgctaaaagatgatcctaaaggcacg
accatgaaaatggtgcaagccattatgaagagcacagatcaaagagttaacgaagataag
cctgttacgccttcattcttctatgctgcgcttctctggtatccactgcgtcaacgcgcc
gaagatattgccgttgaaagtggcctgaccttatacgatgccttctttgccgctatgggc
gatgtaatggagcagcaatgccaaaccatcagtattccacgccgctttagtacgccagcc
aaagacatttggcagttacagttacgctttgatcgtagccaaggcactcgcgcctttaaa
ctgatggaacatcctaagtttagagccgcatacgatttgctcttgctcagaggcgaagtc
gaagcgggtaatgtcgctaagagtgccgcttggtggcaacagtttgttgaagccgatgaa
actgaacgcttagccattgcgcgtagcggcagtaaatcgccaaatcgcaaccgtaatgcc
actcaacgtcgtcgccgtcctcgcgcgccgaatgccgatggttcagcgccgacgagcaca
cctaaggcaagtggcacaccaaaagcgaaagcggcggaataa
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