Shewanella sp. Pdp11: AYJ58_08975
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Entry
AYJ58_08975 CDS
T11329
Name
(GenBank) DNA repair protein RecO
KO
K03584
DNA repair protein RecO (recombination protein O)
Organism
shep Shewanella sp. Pdp11
Pathway
shep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AYJ58_08975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shep03400
]
AYJ58_08975
DNA repair and recombination proteins [BR:
shep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AYJ58_08975
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AYJ58_08975
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecO_N
RecO_C
Motif
Other DBs
NCBI-ProteinID:
AUD59615
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All DBs
Position
2071432..2072142
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AA seq
236 aa
AA seq
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MKRGYVLHHRPYRESSVLVNLLVDGIGRVDVVARTGSGKRSIKSILQPFQPLIFEFSGKS
ELKTLTQVEAAAPAVPLSGQSLFAGMYINELLVRTLSVQHNAEELFLIYHQALVGLAAKF
CQSQLRYIELALLRELGFMPSLSRDTQGEPLVAEDYYQLVPELGFQFVLNSRARNAYQGA
MLTALNDNQLTDVHFLSAKLLMRSLLKPLLGTKPLLSRQLFVSAATPTKIDGNNSP
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtggctatgttctgcatcatcgtccgtatcgagagtccagtgtcttagttaac
ctcttagttgacggcattggacgggtcgatgtggttgcccgaaccggcagcggtaagcgc
tctatcaagagtattctccagccctttcaaccgctgatcttcgaatttagcggtaagtct
gaattaaaaaccttaactcaagtcgaagctgctgcgcctgctgtgcctctatcaggccaa
agtttgtttgctggcatgtatatcaatgagttattggttcgcactttgtctgtgcagcac
aacgccgaagagttgttcctcatttatcatcaagctttagtcggccttgccgcgaagttt
tgccaatcccaactgcgttatattgagctcgccttgctgagagaattaggttttatgcct
tcgcttagccgcgatactcagggcgaaccactcgttgctgaagattattaccagctcgtg
cctgagttaggctttcaatttgtgctcaactcccgtgctcgcaatgcctatcaaggtgcc
atgttgacggcgcttaacgataaccaactcaccgatgtgcattttttgagcgctaagtta
ttgatgcgctccctgttaaagccattactcgggactaaacctttgctgagtcgacaattg
ttcgtcagcgctgccacgccaaccaagattgatgggaataattcgccctag
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