Shewanella sp. Pdp11: AYJ58_10615
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Entry
AYJ58_10615 CDS
T11329
Name
(GenBank) CdaR family transcriptional regulator
KO
K02647
carbohydrate diacid regulator
Organism
shep Shewanella sp. Pdp11
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shep03000
]
AYJ58_10615
Transcription factors [BR:
shep03000
]
Prokaryotic type
Helix-turn-helix
Other families
AYJ58_10615
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Ortholog
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GFIT
Motif
Pfam:
Diacid_rec
HTH_30
GGDEF_2
HTH_8
Motif
Other DBs
NCBI-ProteinID:
AUD59920
LinkDB
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Position
complement(2440229..2441467)
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AA seq
412 aa
AA seq
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MYLLDSAIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVE
ISQEVASGLHGVKPGINLPLHYQGQIIGVVGITGDPSQLSHYGELLKMTAEIIVEQANLQ
DKLQWENRQREEFILQLIKAETDDAQLHRWAKQLEIDISLPRVAAIIEISEKHTQKQHLK
TNTNSSALSLVEASTQSVDERSPRVSETLKQVLHLLQNPDRGNLIAMTSMSQLVILKPAF
LDGKQWDPELENQRIDKLLQRLPAQMDLNFKIALGHFFPEKGGIARSYQTAQETLALGKQ
LNAEGNKYLFEDYSLQVLLAGLKHDWRGQALATPYQQLAKADKNGQLRKTLAAYITHFGD
AQQCANALFIHRNTLRYRLDKIQQITQADIQSLHGLLSLYLGQLLDTSSPPR
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgtatctgcttgattctgccatcgctaaacagattgtgagtcgcacgatgaaaattatc
ggccacaatatcaatgtgatgaacggtcaaggggtgatcctaggttcaggcgatcctaaa
cgtattggttctacccacgaaggcgccctgctggcgattgcccaaaatcgcaatgtggag
ataagccaagaagtggcctcagggctacatggcgttaagccaggcatcaatttacccttg
cattatcaaggacaaatcataggtgttgtcggcattactggcgatccgagtcagctttcc
cattacggcgagttacttaaaatgaccgccgaaataattgtcgaacaagccaacctgcag
gataaattgcagtgggaaaatcgccagcgggaagagtttattctgcaactgatcaaagct
gaaaccgatgatgcacagttgcaccgctgggcaaaacagttagaaattgatatcagcctg
ccaagagtcgcggccatcattgagatcagcgagaaacacacccagaaacaacatttaaag
actaacaccaactcatcggccttatccttagtagaggcatccactcagtccgtagatgaa
cgcagccccagagtcagcgaaaccctcaagcaagtgctgcatctattgcaaaatccggat
cgtggtaacttgattgccatgacctcaatgtcgcagttagtgatcctaaagcccgctttt
ttagatggaaaacaatgggatcctgaacttgaaaaccagcgtatcgataaactgttgcag
cgcttacccgcccaaatggatttaaactttaagattgccctaggccatttcttccccgaa
aaaggcgggatagcgcgctcctatcaaacggctcaagaaaccttagccctaggtaagcag
ctcaatgcagaagggaataaatacctgtttgaagattattccctacaagtgttacttgca
gggctgaaacatgactggcgcggtcaggcgctggcaacgccctatcagcaactcgccaag
gcggataaaaacggccaattacgcaaaaccttagccgcctatatcacccactttggcgat
gcacagcaatgcgcgaatgccctgtttattcatcgcaatacactgagatatcgccttgat
aaaattcagcaaatcacccaagccgacattcaatccctgcatggattattgagtttatat
cttgggcaactgcttgatacttcgtcccccccaaggtaa
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