Shewanella sp. Pdp11: AYJ58_12460
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Entry
AYJ58_12460 CDS
T11329
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
shep Shewanella sp. Pdp11
Pathway
shep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AYJ58_12460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shep03400
]
AYJ58_12460
Enzymes [BR:
shep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AYJ58_12460
DNA repair and recombination proteins [BR:
shep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AYJ58_12460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Viral_helicase1
UvrD_C_2
AAA_11
SH3_13
NAT10_TcmA_helicase
UvrD-helicase
AAA_22
SLFN-g3_helicase
ResIII
TraI_hel_assoc_N
AAA_28
DEAD
nSTAND3
PhoH
UvrD_C
SRP54
PIF1
AAA_16
NTPase_1
TrwB_AAD_bind
Flavi_DEAD
Mg_chelatase
T2SSE
NACHT
Motif
Other DBs
NCBI-ProteinID:
AUD60255
LinkDB
All DBs
Position
complement(2864594..2866828)
Genome browser
AA seq
744 aa
AA seq
DB search
MMRSTQGLKAHSLTAAKWIDHGAIQLSAPLPELLKLWEQERLLTPLDRHFALEMSRLHPS
DSQHPLFILLCALLSQQLSSQHSCLVLAHIVPLNPMAEQNSHCKISLSLEALTETLQTFD
AVGQAGSNKPLIFDNGRLYLQRYHQFETSVAASLIRLSGSVSKHSEEVSHQEQTQTAKLR
SLLDQLFPATVSAPHSLTTNVLTTSVITKSDSTQSTAPIDWQKVATATALGKKLAVITGG
PGTGKTTTVTKLLLLLQMESQQEIRLVAPTGKAAARLSESIKASKARLAKELSAHTDVVD
EARNRNNQDFLTALGRIPEEASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVDL
PMMYKLLSALPEHASLILLGDQDQLASVEAGAVLADICAGLKIPVEPNNLAQNNTASNNS
ALWQMRYSKEQAERLSALTGFELTPYISDAPKLGDSLCMLMHSHRFKGDAGIGQLASAVN
RADLQGILQVWQQGPAELSWLEHSMAVSQTQAKVSEPANNMGLNLLLEQACQQYGIYLSA
LNSDVNISDESHSDLSKRPSTAEIIESFNQYRILCAMRSGDYGVEGINQYVTQALANAKL
IKPLQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDKPERLMAHFIKADGSLLKVLPAR
LPSHETCYAMTVHKSQGSEFSRVALVLPPSPSLAQWQLLTKELVYTAITRAKVHFTCLGT
QHVFERASSQATQRASGLADRLWG
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgctcaacccaagggctaaaggcacattcactcacagccgcgaaatggatagat
catggcgcaatccagcttagcgcgccgctgccagagcttttaaagctgtgggagcaagaa
cgactgcttacaccgctcgatcggcatttcgcactcgaaatgagccgcttgcatccaagt
gacagccaacatcccttgtttattttgctgtgtgcgctattaagccagcaattatcttca
cagcacagttgcctagtgctcgcccatatcgtgccgcttaatcctatggccgagcaaaat
agccattgtaaaatcagcttaagcctagaagcgctcaccgagaccttgcaaacctttgat
gccgtcggtcaagcgggcagtaacaaaccacttatttttgataatggcagactctatttg
cagcgttatcatcaatttgaaacctcagtggccgcttcgttaatccgcctatcgggaagc
gtatctaaacactctgaagaggtaagccaccaagagcaaactcaaaccgctaagttgcgg
tcactgctagatcaactgttccccgccactgtgagcgctccccattcactcactaccaat
gtactcactaccagtgtaatcactaaaagtgatagcacacaaagcacagcacccattgat
tggcaaaaggttgccacggccactgcgctgggtaaaaaactggcggtgatcactggtggc
ccaggtacgggcaaaaccaccactgtgactaagcttttgttattgctacaaatggaatca
cagcaggaaattcgtttagtcgcgccaacgggaaaagcggcggctcgcttaagcgaatca
atcaaagcctcaaaagcgcgtctggcgaaggaactcagcgcccatactgatgttgtcgat
gaagctcgcaatagaaataatcaagactttttaacggcactggggcgcattccagaggaa
gcatcaaccctacacagactgcttggggtgatccccaattcgccgcactttcgccaccat
caaggtaatccgcttaggctcgacttattaatcgtcgacgaagcctctatggtcgatttg
cccatgatgtataagctgctgagcgcactgcctgagcacgccagtttgattttactcggc
gatcaggatcaactcgcctcggttgaagccggcgctgtgctcgccgatatttgtgcgggc
ctgaaaataccagtagaacccaataaccttgcgcaaaataacacagcatctaacaactct
gctctgtggcaaatgcgctattccaaggagcaagctgagcgtctgagtgcgttaacgggg
tttgagttaacaccctatatcagcgacgcgcctaaacttggcgatagcttgtgtatgcta
atgcacagccacagatttaaaggcgatgcagggattggacaacttgcgagcgccgttaat
cgcgcagatcttcaaggtattttgcaagtatggcaacagggacccgcagaattaagctgg
ttagaacacagcatggctgtaagccaaacccaagccaaagtgagcgagcctgctaataat
atgggactcaatttactgctagagcaagcctgccagcaatatggtatttatctcagcgcc
ttgaatagcgatgtaaacattagcgatgaaagtcatagtgatttaagtaagcgtccaagc
acagctgagatcatagaaagctttaaccagtaccgcattttatgcgccatgcgctcgggc
gattatggggttgaaggcatcaatcagtatgtaactcaagcactggccaatgccaagctg
attaaaccgctacaggagttttatctgggtcggccgattatcatccaaagcaatgactat
aacttaggcctgtttaacggtgatatcggattgattttgcaggatgaagataaacccgaa
cgtttaatggcgcacttcatcaaggccgatggcagcctgctaaaagtcttgccagcccgt
ttgcccagccatgaaacctgttacgccatgacagtacacaaaagccaaggcagcgaattt
agccgtgtggccttagtgctgccaccgagccccagcttagcccaatggcaactgctgact
aaagagttggtttacaccgccatcacccgcgctaaagtgcactttacctgcttaggtacc
cagcacgtattcgagcgggccagtagccaagccactcaacgcgcatcgggtcttgctgac
aggctttggggttaa
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