Shewanella sp. Pdp11: AYJ58_12720
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Entry
AYJ58_12720 CDS
T11329
Name
(GenBank) sodium:proton antiporter
KO
K18218
tetracycline resistance efflux pump
Organism
shep Shewanella sp. Pdp11
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shep02000
]
AYJ58_12720
01504 Antimicrobial resistance genes [BR:
shep01504
]
AYJ58_12720
Transporters [BR:
shep02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
AYJ58_12720
Antimicrobial resistance genes [BR:
shep01504
]
Gene variants
Tetracycline resistance genes
Transporters
AYJ58_12720
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Na_H_antiporter
DcuC
Motif
Other DBs
NCBI-ProteinID:
AUD60298
LinkDB
All DBs
Position
2927187..2928569
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AA seq
460 aa
AA seq
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MSEPTALSLIPPLVVLVLAIWLRRPILSLIIGAVTGFLLLDPSQVLNNFASVSLKVMADE
TIGWLILVCGGFGALIALLVRTGGALAFGRNALRFAKGPKSSLLMTFILGIVIFIDDYLN
ALTVGETMKRVTDKFKVSREMLAYVVDSTAAPVCVLVPLSTWAVFFGGLLVDNGVAAEGQ
GIAVYMQAIPYMLYAWLAVAMVLLVALGIVPAIGPMKTAQLRAAQGEPAEAQVDFDQVQT
SDEYAVKAIEEEFKHADNHGKLHNFLVPICLLVAFTVYFDIDVWKGLLATLVITIPYYAV
QRLMPLSEMMDQMIDGFKSMLPAISTVIAAFVFKDVCDQLLLPQYVIESLSPFMTPKLLP
AVVFLSMAILAFATGSSWGIFAVTIPIVMPLAQSVGADIPLVIGALLSASSFGSQACFYS
DSTVLAAQGSGCNLVSHAVTQLPYALIAAVIAFIGFIVIA
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaccgacagcgttaagtctcatcccacctttggtggtattggtgttagctatt
tggttacgccgtcccattttatctctgatcataggtgcggtaaccggtttcctgttactc
gatcccagtcaagtcttaaacaattttgccagtgtgtcattgaaggtcatggccgatgaa
accataggttggttgattttggtgtgtggtggttttggtgcgctgatcgcgcttttggtc
cgcaccggcggtgcattagcgtttggtcgtaatgcactgagatttgctaagggacccaaa
tcgtccctattgatgacctttattcttgggatcgtgattttcatcgatgattatctcaat
gcgctgaccgtgggtgaaaccatgaagcgtgtaacggataagtttaaagtgtcccgtgag
atgctcgcctatgttgtagattccactgccgcgcctgtgtgcgtgttagtgccattatcg
acctgggctgtattctttggtgggttattggtcgataacggtgtggcagcagaaggtcag
ggcattgctgtttatatgcaagcgattccttacatgctttatgcttggttagccgtggct
atggtgctgcttgtggcactcggcatagtgcctgccattggtccgatgaagactgcgcag
ctgcgcgctgcccaaggcgaaccagcagaagcccaagtggatttcgaccaagtgcaaacc
tcggatgaatatgcggttaaagccatcgaagaggaatttaagcacgccgataatcatggc
aagctgcataactttttagtgccgatttgtttgttagtggcctttaccgtgtactttgat
atcgatgtgtggaaaggcctgctggcgaccttagtgatcacgattccttattatgcggtg
caacgtttaatgccgttatccgagatgatggatcagatgatcgatggttttaagagcatg
ctaccggcgattagcactgtgattgcggcgtttgtgtttaaggatgtgtgcgatcagtta
ttactgccgcagtacgtgattgaatctttaagcccgtttatgacgcctaaattgctgcct
gcagtggtgtttttatctatggcgatcctcgcgtttgccacaggttcgagctggggcatt
tttgcggtaactattcctatcgtgatgccattagcgcaatcggtgggtgcggatatccca
ttagtgattggtgccttgttgtcagcatcatcatttggtagccaagcgtgcttctactca
gattcaaccgtattggccgcccaaggctcaggttgtaacttagtaagccatgcagtgact
cagttaccttacgcgcttattgcagcagtaatcgcatttataggctttattgtgattgca
tag
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