Shewanella sp. Pdp11: AYJ58_13790
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Entry
AYJ58_13790 CDS
T11329
Symbol
ruvB
Name
(GenBank) Holliday junction DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
shep Shewanella sp. Pdp11
Pathway
shep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AYJ58_13790 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shep03400
]
AYJ58_13790 (ruvB)
Enzymes [BR:
shep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYJ58_13790 (ruvB)
DNA repair and recombination proteins [BR:
shep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AYJ58_13790 (ruvB)
RecFOR pathway proteins
AYJ58_13790 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
WHD_RuvB
AAA
AAA_5
TIP49
AAA_16
AAA_14
AAA_3
nSTAND3
AAA_22
Mg_chelatase
RNA_helicase
Bac_DnaA
AAA_24
AAA_17
Rad17
NB-ARC
NTPase_1
DUF815
AAA_18
AAA_25
TsaE
NPHP3_N
AAA_11
NACHT
nSTAND_NTPase5
ABC_tran
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
AUD60488
LinkDB
All DBs
Position
complement(3160820..3161824)
Genome browser
AA seq
334 aa
AA seq
DB search
MIEADRLIQPQIQAQDESIDRAMRPKMLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLI
YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP
VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR
LEFYNIKDLSTIVTRSAQVMELDIDAEGAFEIARRSRGTPRIANRLLRRVRDYAQVKHDG
AVTKFVAEHALDLLDVDSEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV
LEPFLIQQGFIQRTPRGRIATARAYQHFELIKPE
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgattgaggcagatagactcatccagccgcagatccaagctcaagatgaatccatcgac
agggcaatgcgccctaaaatgctcgatgaatacacgggccaagatgacactcgggcgcaa
cttaaggtgtttattcaagcggcaaagaatcgtaatgaagccttagatcatatgttgatc
tacggtccgccaggactgggtaaaaccaccttggctatgattgtggcgaacgagatggga
gtgaatattaagtccacctcgggccctgtgcttgaaaaagcgggcgatcttgcagccctc
ttgaccaatcttgaatccggtgatgtgttattcatcgatgaaatccatcgattaagccct
gtggtagaagagattttgtatccggcgatggaagattatcagctcgatatcatgataggt
gaagggcctgcagcgcgttctattaagcttgatttaccgccgttcactctagtaggcgcg
acaacacgggcaggggcgttaacctcaccactgcgggcgcgctttgggatcccgctgcgg
cttgagttttataacatcaaagatttaagcaccatagtcacgcgttcagcgcaggtaatg
gagctggatattgatgctgaaggcgcctttgaaatcgcgcgccgttcacgcggtacaccg
agaatagccaaccgattgctgcgccgtgtacgggattacgcgcaggtgaagcatgacggt
gccgtcactaagtttgtggccgaacacgctttagacttgctagatgtggatagtgaaggt
ttcgattatatggatcgcaaattgttactggctattattgataaatttatgggtggacca
gtaggactagacaacttagccgcagccatcggcgaagagcgtgaaaccattgaagatgtg
ttagaacctttcttgatccagcaagggtttatccaacgtacgccccgcggccgaattgca
accgcacgggcataccagcattttgagttgatcaaacctgaataa
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