Shewanella sp. Pdp11: AYJ58_14015
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Entry
AYJ58_14015 CDS
T11329
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
shep Shewanella sp. Pdp11
Pathway
shep03030
DNA replication
shep03430
Mismatch repair
shep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AYJ58_14015
03430 Mismatch repair
AYJ58_14015
03440 Homologous recombination
AYJ58_14015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shep03032
]
AYJ58_14015
03400 DNA repair and recombination proteins [BR:
shep03400
]
AYJ58_14015
Enzymes [BR:
shep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AYJ58_14015
DNA replication proteins [BR:
shep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AYJ58_14015
DNA repair and recombination proteins [BR:
shep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AYJ58_14015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
DUF3572
DNA_pol_A_exo1
Phage_TAC_11
DHC
HUTI_composite_bact
Motif
Other DBs
NCBI-ProteinID:
AUD60530
LinkDB
All DBs
Position
3217004..3217630
Genome browser
AA seq
208 aa
AA seq
DB search
MPTSAANTLVVLDFETTGLSPNQGDRAIEIGAVLIEDGVITQRFSELMNPGFRISRFIED
YTGISNQMLRDAAPCNEVMARFADFIADHNLVAHNAAFDQRFLDAEFAQIRHRYLGQFGC
SLLVARRLYQTAPNHQLGTLVRYKQLPTDGTFHRALADAEMTGHLWLAMLADLQQEFGVN
APTFELLQKIAKKTKADVPKFLRQYAGK
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atgcctacatcagctgctaacactttagtcgtgctcgactttgaaaccacggggctatcg
cccaatcaaggggaccgcgcgattgaaatcggggcagtgctgattgaggacggcgtgatc
actcaaagattttctgagttaatgaaccctggatttagaataagtcgctttattgaggac
tacacagggatcagcaatcaaatgctcagggacgcggcgccctgcaatgaagtgatggca
cgttttgctgactttattgccgatcacaacttagtcgcccacaatgcggcatttgatcag
cgctttttagacgcggagtttgcccaaattcgccatcgttatcttgggcaatttggctgt
tccttgctggtggcgagacgtttgtatcaaacggcacccaaccatcagttagggacttta
gtgcgctataaacagttgccaaccgatggcacttttcaccgcgccttagccgatgccgaa
atgaccggccatttgtggctggcaatgctggcagaccttcagcaagagttcggcgtcaat
gcccccaccttcgagttactgcaaaaaatcgctaagaaaaccaaagcagacgtaccaaaa
tttttgcgtcaatacgcaggcaagtga
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