Shewanella sp. Pdp11: AYJ58_15915
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Entry
AYJ58_15915 CDS
T11329
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
shep Shewanella sp. Pdp11
Pathway
shep03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AYJ58_15915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shep03400
]
AYJ58_15915
Enzymes [BR:
shep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
AYJ58_15915
DNA repair and recombination proteins [BR:
shep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
AYJ58_15915
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
DUF3014
Motif
Other DBs
NCBI-ProteinID:
AUD60871
LinkDB
All DBs
Position
3671163..3671975
Genome browser
AA seq
270 aa
AA seq
DB search
MKIVSFNINGLRARLHQLQALIDSHQPDIIGLQETKVHDEAFPLAEVEAMGYQVHYHGGK
AHYGVAMLSKVAPEKLQKGFPSDDEDAQRRMIIGTFSQANGRPLTVFNGYFPQGESIDHP
TKYPAKRKFYQDLMHYLQTNHSNDEDIAIIGDINISPTDLDIGIGEVNRKRWLKTGKCSF
QPEEREWLKTLQDWGLVDTFRQLHPERIERYSWFDYRSKGFDDNRGLRIDVILATPSLAA
RLVESDVDYDLRGIDKPSDHAPIWSTFKEA
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatagtgtcctttaacatcaatggtctgcgggcacgcttgcatcaattgcaagcc
ttgatcgatagccaccagcccgacattatcggcctgcaagaaaccaaagtgcacgatgag
gcgtttccattagccgaagtcgaagccatgggatatcaagtgcattaccacggcggtaaa
gctcactatggtgttgccatgctgtctaaagtcgcaccagaaaaactgcaaaagggtttt
ccaagcgatgatgaagatgcccagcgccgcatgattatcggcacattttcccaagcgaat
ggtcgtccattaaccgtattcaacggctatttcccccagggcgaaagcatagatcacccc
acaaaatatcctgctaaacgtaagttttatcaggatttaatgcactacttgcagacaaat
cacagcaacgatgaagatatcgccatcataggtgacatcaatatttcgccgaccgattta
gacataggcataggtgaagtcaatcgtaagcgttggctaaaaaccggcaaatgtagcttc
caaccggaagaacgtgagtggttaaaaaccttgcaagactggggtttagtcgacactttc
cgtcaattacacccagagcgtatcgaacgttattcttggttcgattaccgcagcaaaggg
ttcgatgacaaccgcggcctacgtatcgatgtgattttagcaacgccttcactggcagca
cgtttagtcgaatccgatgtcgattacgatctgcgcggcatagataaaccttcagatcac
gcgcccatctggagcacgttcaaagaggcctaa
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