Shewanella sp. Pdp11: AYJ58_16630
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Entry
AYJ58_16630 CDS
T11329
Name
(GenBank) histone
KO
K03746
DNA-binding protein H-NS
Organism
shep Shewanella sp. Pdp11
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shep03036
]
AYJ58_16630
03400 DNA repair and recombination proteins [BR:
shep03400
]
AYJ58_16630
Chromosome and associated proteins [BR:
shep03036
]
Prokaryotic type
Nucleoid associated proteins
HNS (histone-like nucleoid structuring protein)
AYJ58_16630
DNA repair and recombination proteins [BR:
shep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYJ58_16630
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Histone_HNS_N
Histone_HNS
YkyA
OKR_DC_1_C
ThiS
DUF948
DUF6842
Allexi_40kDa
Motif
Other DBs
NCBI-ProteinID:
AUD60993
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Position
3836268..3836660
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AA seq
130 aa
AA seq
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MSEFLEILTHGRRFKAAVKELSVEELRDLADKLDKILVERESMAEEEEQAMAARNAKIEE
IRQQMEAVGLSIDDLGGVAVKATAKKRAPRPAKYQIEVNGEMVQWTGQGRMPTVFKNEIN
KGRSMEDFLI
NT seq
393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatttttagagatattaactcacggccgtcgttttaaagcagcagttaaagaa
cttagcgttgaagagttacgtgatttagccgacaaattagataaaattttagtagaacgc
gagtctatggctgaggaagaagaacaagccatggcagctcgtaatgctaagattgaagaa
atccgtcaacaaatggaagccgttggtttatccattgatgacttaggtggcgtagctgtt
aaagcaaccgcgaaaaaacgcgctcctcgtccagctaaataccaaatcgaagttaacggt
gaaatggttcagtggactggccaaggccgtatgccaaccgtatttaagaacgagatcaac
aaaggtcgttctatggaagatttcttaatctaa
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