Shewanella sp. Pdp11: AYJ58_17395
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Entry
AYJ58_17395 CDS
T11329
Name
(GenBank) tRNA 4-thiouridine(8) synthase ThiI
KO
K03151
tRNA uracil 4-sulfurtransferase [EC:
2.8.1.4
]
Organism
shep Shewanella sp. Pdp11
Pathway
shep00730
Thiamine metabolism
shep01100
Metabolic pathways
shep01240
Biosynthesis of cofactors
shep04122
Sulfur relay system
Module
shep_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
AYJ58_17395
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
AYJ58_17395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shep03016
]
AYJ58_17395
Enzymes [BR:
shep01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.4 tRNA uracil 4-sulfurtransferase
AYJ58_17395
Transfer RNA biogenesis [BR:
shep03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
AYJ58_17395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiI
THUMP
ThiI_fer
Rhodanese
Diphthami_syn_2
Motif
Other DBs
NCBI-ProteinID:
AUD61141
LinkDB
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Position
complement(4008314..4009768)
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AA seq
484 aa
AA seq
DB search
MKFIVKLYPEIMMKSKPVRMRFTKMLETNIRNVLKKVDEDAKVQRQWDRIMVMVPKDKPE
LAQAFGERLACIPGIAHVVQVDEYSFESVDDIYQQVLPVYRDQLAGKTFCVRVKRSGDHD
FNSIEVERYVGGGLNQFTDALGVRLKNPDITVNLEIDRDNLYMVTKRIEGLGGFPMATQE
DVLSLISGGFDSGVSSYQFIKKGARTHYCFFNLGGAQHEIGVKQVAYHLWKTYGESHKVK
FISVPFEPVVAEILERIDNGQMGVVLKRMMMRTAARIAERMGIQALVTGESLGQVSSQTL
TNLNVIDRCTELLILRPLIAMDKQDIINESRKIGTEDFAKSMPEYCGVISQKPTVKAVLA
KVEAEEKKFSEDLIDQIIAQSVTIDIREIAEQMDTRITETETVASIDSNQVVIDIRAPEE
EESKPLHIEGIEIKRIPFFKLATQFADLDKQKTYLLYCERGVMSKLQALYLIEQGYTNVK
VYRP
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttattgtaaagctgtacccagaaatcatgatgaagagcaagcctgtacgcatg
cgcttcaccaaaatgctcgaaaccaacatacgtaatgtgctcaaaaaagtcgacgaagac
gctaaagttcaacgtcagtgggaccgcattatggtgatggtaccaaaggataagccagaa
ttggcccaagccttcggtgagcgtttggcgtgtattcctggtattgcccacgtagtacaa
gtggacgagtacagctttgaatctgtagatgatatttatcagcaagtcttgcctgtttac
cgtgaccaactcgcgggtaaaaccttctgcgtgcgagttaagcgctcaggcgatcacgat
tttaattctatcgaagtggagcgttacgtcggcggcggcttaaatcagtttaccgatgct
ttaggcgtacgtttaaagaatcccgatattaccgttaaccttgaaattgaccgcgataat
ctttacatggtcactaagcgtattgaaggcttaggtggcttcccgatggcgacgcaggaa
gatgtgttgtctttgatttcaggtggttttgactcaggtgtgtcaagctatcagtttatc
aaaaagggcgcgcgtacccattattgcttctttaatctgggcggcgcgcagcacgaaatt
ggcgttaaacaagtggcctaccatttgtggaaaacctacggcgaatcccacaaggtgaag
tttatctctgtgccttttgagcctgtggttgctgagattttagagcgtattgataatggc
caaatgggcgtagtgctcaagcgtatgatgatgcgcactgcggcgcgcattgcagaacgt
atgggcattcaagccttggtaaccggtgaaagtttaggtcaagtatctagccaaacgctg
accaatttaaacgtgattgaccgctgtactgagctgctgattttacgtccgctgatcgcc
atggataaacaagacattatcaacgagagtcgtaaaatcggcaccgaagattttgccaag
tctatgcctgaatattgcggcgtgatttcgcaaaagccaacggttaaagcggtattagcg
aaagttgaagcggaagagaagaagttctctgaagatttgattgatcaaatcatcgcccag
tctgtcactattgatatcagggagatcgcagaacaaatggatactcggattactgaaact
gaaacggttgccagtatcgatagcaaccaagtggtcattgatattcgcgccccagaagaa
gaggaaagcaaaccgctgcacattgaaggtattgagatcaaacgtatcccattcttcaag
ttagcgactcaatttgccgatctcgataagcaaaagacttatttgctgtattgtgagcgt
ggggtgatgagtaaattgcaggcattgtatttaatcgagcaaggctacacgaacgtcaaa
gtgtatcgcccataa
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