Shewanella sp. Pdp11: AYJ58_18975
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Entry
AYJ58_18975 CDS
T11329
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
shep Shewanella sp. Pdp11
Pathway
shep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ58_18975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shep03019
]
AYJ58_18975
03016 Transfer RNA biogenesis [BR:
shep03016
]
AYJ58_18975
Enzymes [BR:
shep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AYJ58_18975
Messenger RNA biogenesis [BR:
shep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AYJ58_18975
Transfer RNA biogenesis [BR:
shep03016
]
Prokaryotic type
tRNA degradation factors
AYJ58_18975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
AUD61430
LinkDB
All DBs
Position
complement(4393986..4396085)
Genome browser
AA seq
699 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKDADAGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAG
TAGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDAD
LVAQIKELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLE
KKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI
GSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN
GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQTKEAAAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctattgtaaagagttttgagtatggtcaacatacagtcaccctggaaacaggt
gttatagcgcgtcaagctgatgcagccgttttagcgagtatgggtgacacgacagtgtta
gtcactgttgtcggtaaaaaagatgcagatgcaggccgtgactttttccctctgactgtt
aactatcaagaaaaaacctacgcagcgggtaaaattcctggtggtttttttaagcgtgaa
ggccgtccttcagaagatgagactttaattgctcgtctgattgaccgtccaattcgccct
cttttccctaatggtttcaaaaacgaagttcaagttatcattactgtagtctctgtcgat
ccacaaatcgagccagatatcatctctatgataggtacttcagcggcactggctatttct
ggtattccattcagcggtcctttaggtgctgcacgtgtgggttacattgatggcgaatac
gtgttgaacccaagtgttgcgcaacttgcaaccagccaactgaacttagtggttgctggt
actgctggcgcagtattaatggtggaatcagaagcccaagcattaccagaagaagtgatg
ttaggttctgttgtttacggtcacgatcaacaacaagtggttatcaaagcgattgctgaa
tttaaagcagaagccggtaaaccaacttgggattggactgcaccaacgcaagatgccgat
ttagttgcccaaatcaaagagcttgcagaagcgggtttaggtgatgcgtataaaatccaa
gttaaacaagatcgttatgctcaagtttctgttgttaaagcagcaacaaaagaagccttg
ttagccagcaatccaagcattgatttacgtgaagtagacaacttgctgggtagcttagag
aagaaagtggttcgtggtcgcatcatccgtggtgagcctcgtattgatggccgtgaacca
gacatgatccgtgccttaagtgtgttagcgggcgtattgccacgtactcacggtagcgca
ttgttcactcgcggcgaaactcaagcgttagtcacttgtactttaggtactgaacgtgat
gcacagaagattgacagcatcatgggcgagcgcactaaccgtttcatgctgcactataac
ttccctccatactctgttggtgaaacaggcatggtgggttcacctaagcgccgcgaaatc
ggtcatggtaagttagcatggcgcggtatcaatgctgttatgccttcagctgctgaattc
ccatacagcgtgcgcgttgtatctgaaatcactgaatctaacggttcaagctctatggcg
tcagtatgtggtacttcactagcgctgatggatgccggtgtgcctatcaaaacttctgta
gcgggtatcgctatgggtctagtgaaagaaggcgatgatttcgttgttctttctgacatc
ttaggtgatgaagatcatttaggtgacatggactttaaagtggcgggtacacgtgatggt
attactgcattgcagatggatatcaagatcgaaggtatcactaaagaaatcatggatatc
gcactgcaacaagcctatggtgcacgtgtacatatcttgaacgtgatggatcaagcgatt
ggttcacaccgtgatgatatttctgatcacgctccacgtatcactgttatcaagatcaac
ccagaaaaaatccgtgacgttatcggtaaaggtggcgcagttatccgtgctctgaccgaa
gaaacgggcactacgattgaactggaagatgatggtactgtgaagatcgcttcttcaaac
ggcgaagcaactaaagaagctatccgtcgtattgaagaaatcacatcagaagttgaagtg
ggtcgtatctacaatggtaaggttatccgtatcgtcgatttcggcgcattcgtgaacatc
ctgccgggcaaagacggtttagtacacatttcacaaatcagtgatgaacgtgttgctaac
gtgtctgatcaccttgagctgaaccaagaagttgccgttaaggtgatggaagtggatcgt
caaggccgcgtacgtctgtcaattaaagaagcacaaacgaaagaagctgctgctgaataa
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