Shewanella sp. Pdp11: AYJ58_19435
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Entry
AYJ58_19435 CDS
T11329
Name
(GenBank) ligand-gated channel protein
KO
K02014
iron complex outermembrane recepter protein
Organism
shep Shewanella sp. Pdp11
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shep02000
]
AYJ58_19435
Transporters [BR:
shep02000
]
Other transporters
Pores ion channels [TC:
1
]
AYJ58_19435
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Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
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Motif
Other DBs
NCBI-ProteinID:
AUD61506
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Position
4489164..4491317
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AA seq
717 aa
AA seq
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MRLALTPCAASIRYALIGSALFSGMAFATTPVTSTTPPANIERLIISGSRVVERIDEVPS
SVTLIDNATLNQDLKVSSELQNILAMRVPGLAPSSGTSSNAGQTLRGRKALILIDGVPQS
TPLRNGSLDIRSVDVNAIERIEVIKGATSIYGNGAAGGIINYITKKPGDSKAQVNLGASS
KFSTVKFEDSAGYRFNAGVDGSLEKFSYVLNAVTEETGLQRDAEGDVPGLVYGLSETKTQ
NLFTKLQYQFTDAKSLQFTYNYYEAQQDADLVDVSGSINSGVKTYAIKDTSGKPKLGEPQ
GPKGNHNVTLKYVDDALLDNTQMVLDAYGQKIDNMFFFSSSLANPSEGYNGGQSIILSEK
IGLRANFNTEVDWDNIVTNFVYGVDALQDISSQPLEDGRIWVPEMDMTNLAFYLQTKWVL
FDDWVIKAGVRQDSVDLSVSDYNTLKLCASATQCTESIDVKGGELGFNATTYNLGLRYTG
SSLASPFISYSQGADISDLGLLLRTAAVNDIALIKSQAAIIDNYEIGISGYVDAFSYELA
AFFSESELGTSSKYDPVSGAYVPVRAPQEIWGYEAQVSYSWLDNLSTGMSYSFVEGKDTE
KDEYLDGQIISPPKFTATLDWQPTDNSNISLAYLYVGDRDRFEPIDGAYVGSQGPVEHYN
LVNLSSSYQINDWTLSLGVENLFNEDYYSARSQSFTFKGYNTKGLGTTMNVGVSYQF
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgcgactcgcgcttaccccctgtgctgcttcgatacgttatgccttaattggttcggca
ttattttcaggtatggcctttgccaccacaccggtgacctctaccacgccacctgcaaac
attgagcgcctgattatctcgggaagtcgcgtcgtggagcgtattgatgaagtcccctcc
tctgtcaccttaattgataacgctacgcttaaccaagacctcaaggtcagttccgagcta
cagaatattctagcaatgcgagtccctggtttagcgccatcttcggggacttcaagtaat
gcagggcaaacgttacgtggccgtaaggcactcatactgattgatggtgtaccgcaatcg
acaccattgcgtaatggctcgcttgatattcgctcagtagacgtaaatgccatagagcgc
atcgaagtgattaaaggtgcaacctcgatttacggtaatggtgcagcaggcggcattatc
aactacatcaccaagaaacctggcgacagtaaagcacaagtgaatcttggtgcctcgagt
aaattcagcacagtaaaatttgaagacagcgcaggctatcgctttaatgcaggtgtggat
ggctcacttgaaaagttcagttacgtattaaatgctgtgaccgaagaaacgggcctacag
cgtgatgcagaaggtgacgtacctggcctagtttatggattatccgaaacgaaaacacaa
aacctatttaccaaattgcaataccagtttactgatgcaaagtcattgcaattcacctac
aactactacgaagcacaacaggatgcagatttagttgatgtcagtggcagtattaattct
ggcgttaaaacctacgccattaaagatacctcaggcaaacctaaactcggcgaaccacag
ggacctaagggcaaccataacgttaccttgaagtatgtggacgatgcattactagataac
acacaaatggtgttagacgcttacggccaaaaaattgataacatgtttttcttctcttcc
tcactcgctaatccatcagaaggatacaacggtgggcaatcgattattctgtctgaaaaa
attggcttacgcgccaactttaataccgaggtcgattgggacaacatagtcaccaatttt
gtttatggggtcgatgctttgcaggatatcagcagtcagcctcttgaggatggccgtatc
tgggtacctgaaatggacatgaccaaccttgctttctacctgcagactaaatgggtattg
tttgatgattgggtcattaaggcgggagttcgtcaggatagtgtggatttaagtgttagc
gattacaacacgttaaagctgtgtgcgagtgcgactcaatgtaccgaatcgattgatgtt
aaaggtggcgagcttggctttaacgccaccacctataacttagggttacgttatacaggc
agcagccttgctagcccctttatcagttattcccaaggagcagatatttctgatcttggt
ttgttgttacgcactgcggcagttaatgacatcgccttaatcaaatcacaggcagccatt
attgataactatgagataggcatttcaggctatgttgatgccttttcctatgaactggcg
gcctttttcagcgaatcagaactcggcaccagcagcaaatacgacccagtatcaggtgcc
tatgttccagttcgcgccccgcaagaaatttggggctacgaagcacaagtcagttattct
tggttagacaatctcagcaccggtatgagctatagctttgtcgaaggtaaagataccgaa
aaagatgagtatttagatgggcaaatcatctctccacctaaatttaccgctaccttagat
tggcaacccacagataacagtaatataagtttggcttatttatatgtcggcgatcgcgac
cgattcgagcccattgatggcgcatatgttggcagccaagggcccgttgaacattacaac
ctagtcaatttgagcagtagctaccaaatcaatgattggactttatctcttggtgtggaa
aacctgttcaatgaagattactactccgctcgctcgcaatcttttacctttaaaggctac
aacactaaaggcttagggacgacaatgaatgtcggcgtgagctaccagttttaa
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