Shewanella sp. Pdp11: AYJ58_21150
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Entry
AYJ58_21150 CDS
T11329
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
shep Shewanella sp. Pdp11
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shep03019
]
AYJ58_21150
Enzymes [BR:
shep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AYJ58_21150
Messenger RNA biogenesis [BR:
shep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AYJ58_21150
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AUD61822
LinkDB
All DBs
Position
complement(4899682..4902231)
Genome browser
AA seq
849 aa
AA seq
DB search
MLAADVFFLNSLPIHSLLAPLRAAFSRHAQVILEAPTGAGKSTALPLAMLDWPEISGRIL
MLEPRRVAARSVAHYIARCRQQKVGQEVGYRVRGEAKVSANTRLEIVTEGILTRMIQQDP
ELTGIEMIIFDEIHERHLTTDLGLALALEVQASLRDDLKILAMSATLSGLALAELMPEAV
TLHSEGRSFPVEVEYRPVPTQQHWIDHLGRCVLDLVSASSAGVDKTASNNAVLVFLPGKG
EISRLQQYLRERLADDAFLICPLYGELSGAEQDSAIAATTDGRRKIVLATNVAESSLTIE
GIGFVIDSGYKRQASFNPKTGVTRLGLKRISQASATQRSGRAGRLSAGMCVRLWSQEEHG
RMLRADEPEISQADLVAMAHDCAYWGAKSFSDLMLLTPPPSVNEALAWQLLQRLGMVDGQ
NKLTPHGKAAYELGCHPRLAHMLLGAKSLGDDYEQTAQLGSLACLLSGILEARGLPKKGA
DIMNYLHFACQGQAGQQAKQWQKKLGLTADLVKVATHAHHSDVGLLLALAYPDRIAKARG
VEGYQLANGTGVVLAAEDALSQTPWMVVADFQETEGRNAGRIYLASQFQPSLFDSELKDL
LEIHEICGWDEGKGRVIAERQYKVGQILVKTETIAKPERKQIVAALLAYIRQQGLQILNW
NANLEQFQYRLKLAIEFDAGSDWPKVDDEVLLASLETWLAPYLENVNNLPQLVKLDCFGF
VANCLSWQQKQRLEELLPTSWPLVTGTSAPIVYDESGRALLRVRLQETFGMAQSPMLAQG
KLKVTMELLSPAQRPLALTADLASFWQGPYVEVKKEMRGRYPKHLWPDDPVNTLPTKFTK
KKTLGLAQP
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
gtgttggccgctgatgtctttttcttgaactctctacctattcatagcttgttagcaccg
ctgcgtgcggctttttctcgtcacgctcaagtgatcctcgaggcaccgacaggtgcgggt
aaatctaccgcattacctttggctatgttggattggccagaaatcagtggacgtatttta
atgctcgaaccgcggcgtgtcgcggcgcgtagtgttgcgcactatattgcccgttgtcgc
cagcaaaaggtggggcaagaagtgggttatcgcgtgcgcggtgaagctaaagtcagcgcc
aatacccgcttagaaatcgttaccgaaggcatactcacgcggatgatccagcaagatccc
gagttaactgggattgagatgatcatcttcgatgaaattcatgaacgccacctcactacc
gacttaggcctcgccttagcgctcgaagtacaagcttcactgcgggacgatttaaagata
ttagccatgtcggccaccttatctggccttgccttagctgaactcatgccagaggctgtg
accttacacagtgaaggccggagttttcccgttgaggttgaatatcgccccgtgccgacg
cagcagcattggatcgatcatcttggccgctgcgtgctcgatctggtctctgccagtagc
gccggtgttgataaaacggctagcaataatgccgtgctcgtgtttttacccggaaaaggc
gaaatatcacgattgcagcagtatctgcgtgagcgtttagcggatgatgcttttctgatt
tgccccctttatggtgagctttcaggcgcagagcaagatagcgcgattgcggcaactacg
gacggcaggcgcaaaatcgtgctagcgactaacgtggcggaatcgagcttaactattgaa
ggtatagggtttgtcatcgacagcggctataaacgtcaggccagtttcaaccctaaaact
ggcgtcactcgtttaggcttaaaacgtattagccaagcctcggcgactcagcgcagtggc
cgcgccggacgtttatctgcgggcatgtgtgtgcgtttgtggagccaagaagaacatggc
cgcatgctcagggccgatgaacctgagatcagccaagcggatctggtggctatggcccac
gactgtgcttattggggtgcaaaatcctttagtgacttgatgttgttaacgccgccaccg
agtgtgaatgaggcgctggcgtggcaattactgcagcgcttaggcatggtcgatggccaa
aataaactgactccccacggaaaagcagcctatgagctagggtgtcacccaaggcttgcc
catatgttattgggcgcgaaaagcttaggcgatgattatgagcaaactgcgcaattgggc
agtttggcctgtttgctgtcggggattttagaagcgcgcggtttgcctaaaaagggcgcc
gatatcatgaattacttgcactttgcctgtcaggggcaagcgggacagcaggcaaaacag
tggcagaaaaagctcggtttaactgctgacttagtgaaagtcgcgacccatgctcaccac
agtgatgtgggattattgctggcactggcgtatccagatcgcatcgccaaagcccgaggc
gttgagggttatcaattagccaatgggactggcgtggtgttagcagccgaagatgccttg
tcgcaaacgccttggatggtggtggcagatttccaagaaactgaaggcagaaacgctggg
cggatttacttggcgagtcagtttcagccgagcttgttcgatagcgagctaaaagacttg
ctggaaatccacgagatctgtggctgggatgaaggcaaaggccgagtgattgccgagcgc
caatacaaggtcggacaaattttagtgaaaaccgagaccattgctaagcctgagcgcaag
caaattgtcgcggccttactagcttatattcgccagcaaggattacaaattctcaattgg
aacgctaacttagagcagtttcaatacaggcttaaactcgcgattgagttcgatgctggc
agtgattggccaaaggtcgatgatgaggtgttattagcgagcctagaaacttggctggca
ccttacctcgaaaatgtgaataatctgccgcaattagttaagctcgattgctttggtttt
gtggcaaactgtttgagctggcagcagaaacagcggctggaggagttattgccaacctct
tggccgttagttaccggtacctctgcgccaatcgtatacgatgaatctgggcgtgcgctg
ctgcgggtgcgtctgcaagaaacctttggcatggcgcagagccctatgttggcgcagggc
aagctaaaggtgacgatggaattactttctcccgctcaacgtccattggctttaacggcg
gatttagccagtttctggcagggaccttatgtggaagtgaaaaaggaaatgcgtggccga
tatccaaaacatctgtggccggacgatcctgtgaatacactaccaacaaaatttaccaag
aagaaaaccttgggtttagctcagccatag
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