Shewanella sp. WE21: CKQ84_01020
Help
Entry
CKQ84_01020 CDS
T05404
Name
(GenBank) GGDEF domain-containing protein
Organism
shew
Shewanella sp. WE21
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_3
5TM-5TMR_LYT
PAS_9
PAS
PAS_8
PAS_4
PAS_11
Motif
Other DBs
NCBI-ProteinID:
AVI64573
LinkDB
All DBs
Position
complement(251907..254954)
Genome browser
AA seq
1015 aa
AA seq
DB search
MDKGILFPLVQNAALLLALVFLYDVIPKKHQRQYFLLWRIIIGMLIGGIGITIMSTPWVY
LPGVFFDTRSVILCISGLFFGGLPTLVAVVMTALYRISIGGAGIWIGVGVIVSSGLIGVI
WRQYRKSLLANISGGEIFLFAYTVHIVMLLWFLFLPDGIAMPLLAKVTLPVLTIFPIATW
LLSRLLSRRFELERDEQIRLQDDFLFRSQFNAGNIGIAITGIDQKWIKVNPRLCQMLKYS
EAELLRMTWAQITHPDDLEADALKFELMLRGDIDNYEMDKRFIVKDGSVVYTHMTVACKR
GGNNAVLLVIAGYLDITSQAIADQEVLASREQLELVLSSSDLGVWDWDIRNDRIERNARS
ADILGCDVDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETAQHKMEYRLNTVNRKVRW
ILDTGKVVSRDANNNALRMCGTYTDITDAKLIEESLKLSALVYDNSSEAMSVLDEKGVII
TVNAAFSVMTGYREFEVRDQHIRLLYCDLNGRDFYTKMNNDIREKGQWQGEMWQRRKNGE
EYVIWLTINTINDKEGHPYRRVALFSDITDKKQNEHLIWKQANYDTLTGLPNRRMLLEYL
SSEVKNADRNRNHFALLFLDLDFFKEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARL
GGDEFTVVLSSMEDHKGIERVAENILRRIAEPYVLGEETAYISVSIGITLYPDDSTSIEG
LLKHADQAMYAAKDQGRNRFNYFTPSMQEYAKYRMRLIQDLRQAVVNKEFELHYQPIVAL
ATGEVTKAEALIRWHHAERGAVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAAWRHELG
VEIQISVNKSPIQFRDEGTLLNDWLKLLQDLNITGAGVCVEITEGLLLDASMGVTEKLLA
YRDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKIDQSFTRHIDTDSNDQILCEAIIVMAHK
LGMKVIAEGVETDAQCQVLLAAGCDYGQGYLFSRPVPAGEFSRKYLQDPLLVSHV
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggataaaggtattctctttccgttagtacaaaatgcggctttattgctggcgttggta
tttttgtacgatgtgatccctaaaaaacaccagcggcagtattttttactgtggcgcatc
attattgggatgctcatcggtggtattggtatcactattatgagtacgccttgggtatat
ttgcctggcgttttctttgatacccgttcggttattctctgtatttctggtctatttttc
ggtggtttacctaccttagttgctgtcgtgatgacggcgctgtatcgcatcagtatcggt
ggcgctggtatatggattggcgtcggcgtgatagtgtcatccgggttaatcggggtgatc
tggcgtcaatatcgtaagtctctgttagccaatatttcaggtggagaaatttttctcttt
gcctatacagttcatatcgtgatgttgttgtggttcttatttttacccgatggcatagca
atgccattgctcgccaaagtgaccctcccagtattgaccattttcccgatagcgacttgg
ctattgagccgcttgttatcgcgacgttttgaattagagcgtgatgaacaaattcgtctg
caggatgattttctttttcggagccaattcaacgcgggcaatattggtattgcaataacg
gggatagatcaaaagtggataaaggtgaatccacggttatgtcaaatgctcaagtattca
gaagctgaattgttacggatgacgtgggcacaaattactcatcccgatgatttagaagcg
gatgccctgaaatttgagcttatgctgcggggggatatcgataattacgagatggataaa
cgttttatcgttaaagacggtagcgtggtttacacccatatgacagtcgcctgtaagcgc
ggtggtaataatgccgtgttgcttgttattgctggatatttagatatcacctcacaggcc
attgctgaccaagaggtgctcgctagccgtgagcaactcgaactggtgttaagcagtagc
gatcttggggtgtgggattgggatattcgcaatgaccgcattgaacgtaacgcccgcagt
gccgatattcttggctgcgatgttgatatgctcaacgctaatagtcgccaatggatggat
gcgatagtcgccgaagacaggcctaaagtgctgcattcgattgaggcccatattcgtggc
gaaacggcgcaacataagatggagtaccgcttaaataccgtaaaccgtaaggtgcggtgg
atccttgatacgggtaaagtcgtgagcagagatgcaaacaacaatgctctgcgtatgtgc
ggaacctataccgatattaccgacgcaaaacttatcgaagaatccttaaagttgtcggca
ctggtttacgataacagttcagaagccatgagtgtcctcgatgaaaagggtgtgattatt
accgtcaacgccgcctttagtgtgatgacgggttatcgcgaatttgaagtgcgggaccaa
catattcggctgctttattgtgacctcaatggccgcgatttttacaccaaaatgaataat
gatatccgcgagaaaggccaatggcagggggaaatgtggcagcggcgcaaaaatggcgag
gaatatgtcatctggttaaccatcaatacgattaatgataaagaaggccatccctatcga
cgtgttgccctgttctcagacattaccgataagaagcaaaatgagcatctgatttggaaa
caagctaactacgatacgctgacggggttgcctaatcggcgcatgttgttggagtattta
agcagtgaagtgaaaaatgccgaccgcaatcgcaaccactttgccttattgttcttggac
ttagatttctttaaagaagtgaatgacaccttaggccatgccatgggcgatttactgttg
atagaaaccgcgagtcgattgaaatcctgtgtgcgtgatgccgacgtcgtagcgcgtctt
ggcggcgatgaatttactgtggtgttaagttcgatggaagaccataaggggattgagcgc
gtcgccgagaatattttgcgaagaattgccgaaccctatgtgttaggggaagaaaccgct
tatatcagcgtcagtatcgggattactttatatcccgatgattcgaccagtattgaaggg
cttctcaagcatgcggatcaggctatgtatgcggcgaaagatcaagggcgtaatcgcttc
aactatttcaccccatcgatgcaggaatacgccaaataccgcatgcgcttgatccaagac
ttacgtcaagcggtcgtgaataaagaatttgaactgcattatcagccgattgttgcctta
gcaacgggtgaagtgaccaaggctgaagccttgatccgctggcatcatgcggagcgtggt
gctgtgtcgcctgctgagtttattcctgtggcagaagacaccggcttgattgttgaaatc
ggcaattgggtgttcgagcaagccgctcgccagagtgcggcgtggcgtcatgaattaggg
gttgaaatccaaatcagcgtcaataaatccccaatccaatttcgtgatgaaggcacgctg
ctcaatgattggttgaagttattgcaagatcttaatattacaggcgcgggcgtgtgcgtt
gaaattaccgaaggcctgttattggatgccagtatgggcgtgaccgaaaaactactggcc
taccgcgatgcgggtgtgcaagtgtcgctggacgattttggtacgggctattcgtcactt
gcctatttgaaaaagtttgatatcgattatcttaaaattgatcaatcttttacccgccat
attgataccgattcaaacgatcaaattctctgcgaggcgattatcgtgatggcccacaag
ttgggaatgaaggtgattgccgaaggtgtcgaaaccgatgcgcagtgccaagtgttgttg
gctgctggttgtgactacggccaaggttacttgttctcaagacctgtgcctgcgggtgaa
tttagccgaaaatacttacaggatccgcttttagtctcccatgtctga
DBGET
integrated database retrieval system
