Shewanella sp. WE21: CKQ84_01315
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Entry
CKQ84_01315 CDS
T05404
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKQ84_01315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shew03019
]
CKQ84_01315
Enzymes [BR:
shew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKQ84_01315
Messenger RNA biogenesis [BR:
shew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKQ84_01315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
P-loop_SecA
ERCC3_RAD25_C
DegT_DnrJ_EryC1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AVI64622
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All DBs
Position
complement(330873..332111)
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AA seq
412 aa
AA seq
DB search
MSFSALSLNSTLVNTLAVLGYESPTPIQLEAIPAILANRDVMAGAQTGTGKTAAFALPIL
HHLMTLSPSQELITVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRIGIAYGGVSIDAQ
VAVFNAGIDVLIATPGRLLDHLRQGALNLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVP
SDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSH
LVRSKNWHQVLIFSRTKQGVDKLVQQLNKADISTQAFHGDLSQGAREKVLQEFKQGKIQV
LVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLE
EVEVVLDKRLPQQWLLGFEPDFNKMDTEPRRNGKAAQKQRAKKRALGGKGKR
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttagtgccttatccttaaactccacgttagtgaataccttagcggttcttggc
tatgaatcgccaacgccaatccagttagaagcgatccctgccatcttagctaatcgggat
gtgatggctggcgcccaaacgggtacaggcaaaaccgctgcgttcgccttgcctatcttg
catcatttgatgacactcagcccttcgcaagaattaataactgtgagacccgtacgcgca
ttagtcttagtgccgacacgtgaactggcggtgcaggtacagcagagttttgttaagtac
gctaaagggactgatattcgtatcggtatcgcctacggcggcgtgagtatcgatgcgcag
gttgccgtgtttaatgcagggattgatgtgttaatcgcaacaccgggtcgcttactcgac
caccttaggcaaggtgcattaaatcttaagcaattgagtgtgcttgtttttgatgaagcc
gaccgcatgctcgacatggggtttatggatgaaattcaagccgtgctcaagcaagtgccg
agtgacagacaaaccctgttattttctgccactttagatgccgctatcttcagcttaagt
aaaactttactgcgcgatcctaagttgattgaagttgccaagcgcaatacaaccgctgcc
gaaattgaacaagtggtttatgccgtcgacgccgaccgtaaaaccgaactcgtcagccat
ctggtgcgcagtaaaaactggcatcaagtgctgatttttagtcgcactaagcaaggcgtc
gataaactggttcagcaactcaataaagccgatattagcactcaggcgtttcacggtgac
ttgtcccaaggcgcgcgcgagaaggttttgcaggaatttaaacaaggtaagatccaagtg
ctagtggcaacggatgtcgccgccagaggcctagatatcgtcgagcttaaatatgtgatc
aactttgagctaccctttattgctgaagattatattcatcgtattggtcgcacaggtcga
gcgggtagtgcagggcttgctatcaccctctttagtcaagaggacgccctattattggaa
gaagttgaagttgtgctcgacaagcgtctaccacaacaatggttacttggctttgaaccc
gactttaataagatggataccgaacctagacgtaacggcaaagcggctcagaagcaaaga
gcgaagaaacgggctttgggtggaaaggggaaaaggtag
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