Shewanella sp. WE21: CKQ84_01850
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Entry
CKQ84_01850 CDS
T05404
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
shew
Shewanella sp. WE21
Pathway
shew02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CKQ84_01850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shew03021
]
CKQ84_01850
Transcription machinery [BR:
shew03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CKQ84_01850
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
AVI64724
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Position
449111..450949
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AA seq
612 aa
AA seq
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MDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAP
DADDMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINTVQSSVAEYPQAIAMILEQFDQFEADELRLSDIISGFVNPDEDDVAPTATHI
GSELSEEELDDEDDEEDDDDSEDEEEGNKGPDPEEARERFGQLRAAYESALKIIEAKGRE
HPESVKALFEIGEIFKEFRLVPKQFDRLVKSMRTMMDRVRVQERLVLKLCVEQAKMPKKN
FVKFFTGNETNLDWFNTEKASTKPYAEGLRMVEDDVIRCRTKLAAVEEETGLAISAIKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPE
ELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLK
NATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEILKSFLDE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggatcatactccgcagtcgcaacttaagctgttgcttgccaaaggtaaagagcaaggt
tacttaacctatgcagaagtgaacgatcacttacctgcagacatggtcgattctgaccag
atcgaagatattatccagatgataaatgacatgggtatccgggtgttcgaagaagccccc
gatgccgatgacatgatgatgtcggaagacaacacagacgaagatgcagcagaagaagcc
gccgcagcactggcaacagtagaaagcgaacttggccgcacaaccgatcccgtacgcatg
tacatgcgtgaaatgggtaccgttgagcttctgacccgcgaaggcgaaattgttatcgcc
aaacgcatcgaagaaggcatcaacacagttcaaagttcagtcgccgaatatccacaagcg
atcgctatgatccttgagcaattcgaccaatttgaagccgacgaactgcgcttatctgat
attatctctggatttgtaaacccggacgaagatgacgtcgccccgacggccactcacatc
ggctcagaattatctgaagaagagctggacgatgaagatgacgaagaggatgacgatgac
agcgaagatgaagaagaaggcaacaaagggcctgatcctgaagaagctcgtgaaaggttc
ggtcaacttagagccgcttacgaaagcgcactgaaaattatcgaagctaagggccgtgaa
caccctgaatcggtaaaagccctcttcgaaatcggcgaaatcttcaaagaattccgctta
gtacctaagcagtttgaccgtttagtcaaaagcatgcgcactatgatggaccgcgtgcgt
gttcaagaacgtttagtgttaaaactgtgcgttgaacaagccaaaatgccgaagaaaaac
ttcgtcaaattcttcactggcaacgaaaccaaccttgattggttcaacacagagaaagcc
tcaacgaaaccttatgccgaaggcctaagaatggttgaagatgacgtcattcgttgtcgt
accaagcttgcagcagttgaagaagaaaccggcttagcgatttctgccataaaagacatc
aaccgtcgtatgtcaatcggtgaagccaaagctcgccgtgcgaagaaagaaatggttgaa
gccaacttacgtctggtaatttctatcgcgaagaaatacaccaaccgtggtctgcaattc
ttggacttaatccaagaaggtaacattggcttaatgaaagccgtagataaattcgaatac
cgtcgtggttataaattttcgacctatgcaacttggtggatccgtcaggcgattacccgt
tctatcgccgaccaagcgcgtactattcgaattccagtacacatgatcgaaacgatcaac
aagctgaaccgtatctctcgccaaatgctacaggaaatgggccgcgagccttcacctgaa
gaactggctgagcgtatgatgatgccggaagataagatccgtaaggtactgaaaatagct
aaagaacctatctccatggaaaccccaatcggtgacgatgaagattcgcatttaggtgat
tttatcgaggatacaaccctcgaattaccactggattctgcgaccagcgaaagcttgaaa
aacgccactcacgaagtgttagcaggtctaaccgcccgtgaagcgaaagtgctgcgtatg
cgttttggtatcgatatgaacactgaccacacacttgaagaagtgggtaaacagttcgac
gtgacccgtgaacgtattcgtcagattgaagctaaggcactgcgcaaactgcgtcaccct
tcacgctcagaaatcttaaaatcattcctagatgaatag
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