Shewanella sp. WE21: CKQ84_03120
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Entry
CKQ84_03120 CDS
T05404
Name
(GenBank) formate dehydrogenase subunit alpha
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
shew
Shewanella sp. WE21
Pathway
shew00630
Glyoxylate and dicarboxylate metabolism
shew00680
Methane metabolism
shew01100
Metabolic pathways
shew01120
Microbial metabolism in diverse environments
shew01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
CKQ84_03120
09102 Energy metabolism
00680 Methane metabolism
CKQ84_03120
Enzymes [BR:
shew01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
CKQ84_03120
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Pyr_redox_2
Molydop_binding
Fer4_20
Molybdop_Fe4S4
Pyr_redox
Pyr_redox_3
NAD_binding_8
Fer4_7
Fer2_4
DAO
Fer4
HI0933_like
Fer4_6
NAD_binding_7
Fer4_8
FAD_oxidored
Thi4
GIDA
Fer4_16
FAD_binding_3
Fer4_18
FAD_binding_2
Fer4_2
AlaDh_PNT_C
Fer4_9
Amino_oxidase
Fer4_10
Shikimate_DH
Fer4_21
Lys_Orn_oxgnase
Fer4_17
Fer4_15
2-Hacid_dh_C
Fer4_22
Motif
Other DBs
NCBI-ProteinID:
AVI64953
LinkDB
All DBs
Position
746050..750315
Genome browser
AA seq
1421 aa
AA seq
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MIELRIDDQVLSVNPTDNLLQVAHAAGIAIPSLCDPSAASQQLGVHEHADKQACNLCVVQ
IENSDASLRCVRACETSATVGMRVITQSEFLSQKRKQSLTEILSDHFADCEAPCQQACPA
GVDVQSYLYHIAQGNHTEAVKVIKQTLPLPLSIGRVCPAFCEAQCRRGLVDEPIAIRQLK
RHAADLDLADGENGGMSYVPPRQTDTGKKVAIIGAGPAGLSAGYYLSNQGHSVEIFESMP
QAGGWLRYGIPEYRLPKAILDKEIALLCRNGLTIYTETRLGHEIHLNQLVEDFDAVCLAI
GAQKAVPMDYPGSTLAGCYLGVDYLKDHCLEKTLILGKKVAVIGGGNTAIDCARTAVREG
CDVTLIYRRTRAEMPAEAYEVHEAEVEGVKFHFLTNPLENHSDAQGRVHSVTFAKMALGE
ADASGRRAPVDTGETFTQDFDTVIAAVSQTPDMSFMQDPASHLSNGELALSRWNTFIGCE
HTMSSGVEKLFVVGDARRGPATAVAAIGDGHKAAIAIDKLLKQGLSCELHATEFNSSKAV
GNTIKQGLPTTELYPYVARKARLTMPELNAVQRLLNYGEVELGFAPDTAMQEAARCLECA
CQANTDCKLRDYATDYHVEPKSLSTQSARKFSVDKSSPFIQFDANRCISCGKCVDVCQLQ
SGHCAIQFAHDSYQALPQDISETTTRRAPRVGFNASMADSKCVQCGNCVQVCPTGALVDA
RDKRQGDEMPLKTASTICTYCGVGCRLDLKIDTSTNQIRHIEGNKESVVNQGMLCVKGRF
GFDFIHSEKRLTTPLIRKNGQLTPSSWPEAIAYVAENLQRIKQQHGSNALASLASAKATN
EENFLLQKFVRSILGTNNIDHCARLCHSSTVTGLQQSIGSGAMTNDIPSIQASDVIFIIG
SDTSSAHPIIASKIKQAVALHGARLMVADPKRVAIADSAQLYVAHRPGTDVMLLNAIMAE
IIRNDWQDKSYIAARTEGVDALYAELKKVDYSLKNAALITGVKAEDIARIAQTIGTADKT
AVYYAMGITQHTTGHDNVTAISNLQLLCGNIGVEGAGINPLRGQSNVQGACDMGALPNFF
SGYQKVTDIHARMRFEAHWQTPLSGEIGVTATHMMHDISKGKIKALYVMGENPVLSDPDQ
AHVLRALNAIDFLVVQDIFLTETAELANVVLPAAAFVEKRGHFTNTERRVQRLEQALLPP
GEALPDWQIVQAIANAMGAAWDYPNEEAIWQEINQLTPQYRGITWQRLSTGVDGKIPQGI
QWPCPDEAHPGTPIMHQGQFTRGLGKFTPVSYRLPAEMPCSEYPLTLSTGRLLEQFHTGT
LTRKTAGLDLLGSPKVMISVYDAEQLGIGNGDKIKLTTRRGEIEIDAFVTKRAQAGVLFL
PFHFVEAAANKLTINALDPVAFIPEYKVCSVRVERVAEKID
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacttcgaattgatgaccaagtgttgtcggttaatccgaccgataacctactg
caagtggcgcatgctgctggcatagcaatacccagcttatgtgatcccagcgcagcctcg
cagcaattaggcgttcacgagcatgcagacaagcaagcctgcaatttgtgtgtcgtccag
attgagaattctgacgccagtttgcgctgcgtacgcgcctgtgaaacgtccgccacagtc
ggcatgcgagtcataactcagtctgaattcttaagtcaaaaacgcaaacaatcgctgact
gagatcttgagcgatcattttgccgattgcgaagccccctgccaacaagcatgccccgcg
ggcgtcgatgtgcagagttacctgtatcacatagcccaaggcaaccatactgaagccgtt
aaagtcattaaacaaactttgccgctgccactctccattggccgtgtctgccctgctttt
tgtgaagcacaatgtcgccgcgggctggtcgatgagcccattgccatacgtcaattaaaa
cgccacgccgccgatctcgacttagctgatggcgaaaatgggggcatgagttatgtgccg
ccacgccaaaccgacacgggcaaaaaagtcgcgattatcggtgcgggtccagcagggtta
agtgccggatattacttatcaaaccaaggccatagcgttgagatattcgaatctatgcca
caggcgggtggctggctgcgctatggcattcctgaatatcgcttacctaaggcgatacta
gacaaggagatcgcactcctgtgccgcaatggcttaaccatatacacagaaacgcgtctc
ggtcacgagatacatttaaatcaattagttgaagatttcgatgccgtttgtcttgccatt
ggcgcccaaaaagctgtgccaatggattatccaggtagcacactcgcaggttgctactta
ggtgtcgattacttaaaagatcattgtctcgaaaagacacttattttaggtaagaaagtc
gccgtcattggtggtggcaataccgctattgattgcgcccgcacagcggtgcgtgaaggc
tgtgatgtcaccctaatttaccgtcgtacccgcgcagaaatgcccgccgaagcttacgag
gtacacgaggccgaagtcgaaggggtgaagtttcattttttaaccaatccgcttgaaaac
catagcgatgcgcaaggtagagtacattctgtcaccttcgctaagatggcactcggcgaa
gccgatgcctctggcagacgcgctcccgttgatactggtgaaacctttacccaagatttt
gatactgtgatagccgcagtatcacaaactcccgatatgagttttatgcaagatcccgcg
agccacttaagtaatggtgaactcgctctcagccgctggaatacctttattggctgcgag
cacactatgtcatcaggggttgaaaaactcttcgtggtgggggatgcacgccgcggccct
gctaccgcagtcgccgccataggtgatggccataaagccgccatcgccatagataaatta
ctcaaacaaggcctaagctgtgagctgcatgccactgaatttaattcatcaaaagcagtc
ggtaacacaataaaacaaggcttgccaactaccgaactctacccctatgtcgcacgtaaa
gcccgtttaaccatgcccgaattgaacgcggtgcagcgtttactcaattacggcgaagtc
gagctgggctttgcccccgataccgccatgcaagaagccgcgcgctgccttgaatgcgcc
tgccaagctaatacggattgtaaattaagggactatgcgactgactaccatgtcgagcct
aagtcactcagcactcaaagcgcgcgcaagttttcggtcgataaatcgagtccgttcatt
caatttgatgcaaatcgttgtattagctgtggtaagtgcgtcgatgtgtgccagttgcag
agtggccattgtgcgattcaatttgcccatgattcttatcaagcgctgccgcaagacata
agtgaaaccaccacgcgccgagcaccgagagtcggctttaacgccagcatggccgacagc
aaatgtgtgcaatgcggcaactgtgtgcaggtttgcccaacgggtgcactcgtcgatgcg
cgggataaacgccaaggcgatgaaatgccactcaaaaccgcatcaacgatttgtacctat
tgcggcgtaggctgtcggcttgaccttaaaatcgataccagcacgaatcagatccgtcat
atcgagggcaataaagagtctgtggtaaaccaaggcatgttgtgtgtgaaaggccggttt
ggtttcgattttattcacagtgaaaaacgcctcaccacgccactcattcgtaaaaatggc
cagctcacgccaagtagttggcctgaagccatcgcctatgtggccgaaaatttacagcga
ataaaacagcaacatggcagcaatgcactggcaagtttggcctcggcaaaagccaccaat
gaagaaaacttcctcctgcaaaaatttgtcagaagcatactcggcaccaataacatcgac
cattgcgcccgtctgtgccattcatccacagtcactgggctacagcaaagtatcggtagt
ggtgccatgaccaatgacattccgagcattcaagcatcggatgtgatttttatcataggc
tcagacaccagcagtgctcacccgatcatcgcctcgaaaattaagcaagccgtggctttg
catggcgcaagattaatggtggccgaccctaaacgtgtcgccattgccgacagtgcacag
ctttatgtcgcccacagacccggcacagacgtcatgctactcaatgcgattatggcggaa
attatccgcaacgactggcaggataaaagctacattgccgcacgcaccgaaggcgtggat
gctctctatgctgaactaaaaaaagtagattacagcctaaagaatgcagccttaataaca
ggcgttaaagccgaagatatcgcccgcatcgcccaaaccataggaacggccgacaaaacc
gcagtctactatgccatgggcattacccagcacacgacgggacacgacaatgtcaccgcc
atatctaatctacaacttctgtgcggcaatattggagttgaaggagcggggattaatcca
ctgcggggacaaagtaatgtgcaaggtgcctgtgacatgggcgcactgcctaacttcttc
agtggttatcaaaaagtcaccgacattcacgccagaatgcgtttcgaggcacattggcaa
acgccgttatcgggagaaattggcgtaaccgcaacccatatgatgcatgatatttccaaa
gggaaaatcaaggctttatatgtgatgggcgaaaaccccgtattaagcgacccagatcaa
gcccatgtgcttagggcgcttaatgcaatcgactttttagtggtgcaggacatcttcctc
accgaaaccgccgagcttgccaacgtggttctgcccgccgcagcctttgtcgaaaaacgc
ggtcatttcactaatactgaacgacgagtgcagcgactcgaacaggccctgctaccgccg
ggtgaagccctgcccgattggcaaattgtccaagccattgccaatgcgatgggtgccgct
tgggattaccctaatgaagaagcgatttggcaggaaatcaatcagttgacaccacaatat
cgcggcattacttggcagcgattaagcactggagttgacggtaaaattccccaaggtatt
caatggccttgcccagatgaagctcatcctggcactcccattatgcaccaagggcaattc
acccgcggcttaggtaagttcacgccagtgagttatcgcttacccgcagaaatgccctgc
agtgagtacccgctcaccctctcgaccggacgtttactggaacagttccacacaggcacc
ttaacccgtaaaacggccggactcgacttactcggctcgcctaaggtaatgatttcagtc
tatgacgccgagcaactcggcataggcaatggcgataaaatcaaactcacaacccgtcgc
ggtgaaattgaaatcgacgcctttgtgacgaaaagagcccaagctggcgtactattcctg
cccttccattttgttgaagcggcggcgaataaactcaccatcaatgcgctcgatcctgtc
gcttttatcccagaatataaggtctgctcagtaagggttgagcgggttgccgagaaaatt
gattag
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