Shewanella sp. WE21: CKQ84_03960
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Entry
CKQ84_03960 CDS
T05404
Name
(GenBank) OsmC domain/YcaO domain-containing protein
KO
K09136
ribosomal protein S12 methylthiotransferase accessory factor
Organism
shew
Shewanella sp. WE21
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shew03009
]
CKQ84_03960
Ribosome biogenesis [BR:
shew03009
]
Prokaryotic type
ribosomal protein modification factors
CKQ84_03960
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YcaO_C
YcaO
OsmC
Motif
Other DBs
NCBI-ProteinID:
AVI65105
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All DBs
Position
complement(938080..940269)
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AA seq
729 aa
AA seq
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MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCK
ARDIPTDNIRLSQNNIVDPEDRYNQIFQIQVELPEDISEKDREGILRSIDRCTVKKVVQT
GPEFKIETVENLDSDANAMLMGQPNGASSTFILGKDLPLEQTIANMTGMLADLGMKIEIS
SWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNNNFFYNDQFFGTE
IANSEFVHYPNEKWFALEEDDALPAGILDDYCLEIYNPDEELCGSHLIDTNSGNIKRGIC
AIPYTRKSDGETVYFPSNLIENLFLSNGMSAGNNLQEAHVQCLSEIFERAVKRQIIEQEI
VLPDVPMSVLEKYPSILAGVNGLEEQGFPVVVKDASLGGQFPVMCVTLMNPKTGGVFASF
GAHPSFEVALERSLTELLQGRSFEGLNDVPKPTFNSMAVSEPENFVEHFIDSTGVISWRF
FSSKFDYEFCEWDFSGTSEEEADGLFGILEALGKEVYIAEFTDLGASACRILVPDYSEIY
PVDDLIWDNTNKALAYREDILNLHSLSTKQLANLVNRLEESQLDNYTDIRTLIGIVFDEN
TVWGKLTIIELKILIYLALGAHEDAIELVGEFLQFNDNTVKRGLFYQAMNAVLEVTLDEE
LELDDFIHNFNRMFGKEVMDNVVGSVTGKVRFYGLTKTSMQLEGIEPHLRLIESYKKLHQ
ARKAAKDLN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaaagttaattttctcgacaatcttagacttgaagccaagtttgatgatttt
accgtgaccgccgatcagccaatccgctacaaaggtgatggttctgcccctagtccgttt
gactatttcttagcgtcgtcagccctgtgtgcggcctatttcgtgaaggtatattgcaaa
gcccgtgatattccaacggataacattagactgtcgcagaataatattgttgatccagaa
gatcgctacaatcagattttccaaattcaagttgagttacccgaagatatttcggagaaa
gatcgcgaaggtattttgcgctcgattgaccgttgtaccgttaaaaaagtggtgcaaact
ggcccagaatttaaaattgaaaccgttgagaacctagattcagacgccaatgccatgtta
atgggtcagcctaatggcgcatcgagcacctttattctgggtaaagatctgccgctggag
caaaccattgccaatatgacgggcatgctcgccgatcttggaatgaagatagagatctca
tcatggcgcaatatcgtgccgaatgtgtggtcactacacattcgtgatgcggcttcgcca
atgtgtttcaccaatggtaaaggcgcgaccaaagaaagcgcgctgtgctcggcactcggc
gagtttattgagcgtctgaataacaactttttttataatgatcaattcttcgggactgaa
atcgccaatagcgaatttgtgcattatcccaatgaaaagtggtttgcgttagaggaagat
gatgcgctgccagcgggtattttggatgactattgcttagagatttataatccagatgag
gagctttgcggctcgcacttgattgatactaactcaggtaatattaagcgcggtatctgt
gcgattccttacacccgtaaatctgacggtgaaacggtttacttcccatcgaacctgatt
gaaaacctgttcttaagcaatggtatgagtgcgggtaataacctgcaagaagcccatgtg
cagtgcttgtcagagatttttgagcgcgctgtaaaacgtcaaatcattgagcaagaaatt
gttctgcccgatgtgcctatgtctgtactagaaaagtacccaagcatcctcgcgggcgtt
aacggtttagaggagcaaggtttcccggttgtggttaaagatgcctcactcggcggccag
ttcccagtgatgtgcgtcaccctgatgaacccgaaaactggcggtgtattcgcctctttt
ggcgcgcacccaagctttgaagtggcgttagagcgtagcttaactgaattgctgcaaggc
cgtagcttcgaaggcttaaatgatgtgccaaaaccgacctttaacagtatggcggttagc
gagccagaaaactttgttgagcactttattgattcaacaggagtgatttcatggcgcttc
tttagcagtaaatttgattatgaattctgcgaatgggatttttctggcactagcgaagaa
gaagctgacggcctgtttgggatcttagaagcgttaggtaaagaggtgtatatcgccgag
tttaccgatttaggcgcatcggcgtgccgtattttagtacctgattactctgagatttat
ccagttgatgatttgatttgggataacaccaacaaggcgctggcgtaccgtgaagatatc
ttaaatctacattcgttaagcactaagcaattggctaatttggtcaaccgtttagaagaa
agccaactcgataactacacggatattcgcaccttaatcggcattgtatttgatgaaaat
accgtgtggggaaaactgacgattattgagcttaagatcctgatttatttggcactcggt
gcacatgaagacgcgattgagctggtcggtgagttcctgcagtttaacgacaataccgtt
aaacgtggcctgttctaccaagccatgaatgctgtgctggaagtgaccttagatgaagag
ttagaacttgatgattttatccataacttcaaccgtatgttcggtaaagaagtgatggac
aacgtcgttggctcagtcacaggaaaagtgcgtttttatggcttaactaagaccagcatg
cagctcgaaggcattgagccgcatttaagattgattgaaagctataagaagttgcatcaa
gcccgtaaagctgcgaaagacctgaattaa
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