Shewanella sp. WE21: CKQ84_04585
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Entry
CKQ84_04585 CDS
T05404
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
shew
Shewanella sp. WE21
Pathway
shew03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CKQ84_04585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shew03019
]
CKQ84_04585
03009 Ribosome biogenesis [BR:
shew03009
]
CKQ84_04585
Messenger RNA biogenesis [BR:
shew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CKQ84_04585
Ribosome biogenesis [BR:
shew03009
]
Eukaryotic type
Pre-60S particles
RNases
CKQ84_04585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AVI65216
LinkDB
All DBs
Position
complement(1074377..1074922)
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AA seq
181 aa
AA seq
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MTADVNNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDD
WNQKHHGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYM
RELEDYFHYRNVDVSTIKELVKRWSPETMAGFKKQNTHQALQDIQESIAELQYYRSKVFK
I
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgacggcagatgtaaataatctcatttggatcgatttggaaatgacagggttagagccc
gacgtcgacaggatcattgaaattgccactttagtgacagatcaagaactcaatattatc
ggtcaaggtccggttatcgcgattcatcaatcggatgacgtgctagctgctatggatgat
tggaatcaaaagcatcatggtgagtctgggttgattgatcgcgttcgtgctagccaagaa
accgaagcgcaagccgtggctaagactattgccttcttagaacagtatgttcctaagggc
gcctctccaatgtgtggtaacagcattggtcaagatagacgctttttaaatcgttatatg
cgcgagttggaagattatttccactaccgcaatgtggatgtcagtacgattaaagagcta
gtgaagcgttggagcccagaaactatggcgggctttaagaagcaaaacactcaccaagca
ctgcaggatatccaagagtcgatcgctgaattgcagtattatcgcagcaaagtatttaaa
atttga
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