KEGG   Shewanella sp. WE21: CKQ84_04800
Entry
CKQ84_04800       CDS       T05404                                 
Name
(GenBank) HU family DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
shew  Shewanella sp. WE21
Brite
KEGG Orthology (KO) [BR:shew00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shew03032]
    CKQ84_04800
   03036 Chromosome and associated proteins [BR:shew03036]
    CKQ84_04800
   03400 DNA repair and recombination proteins [BR:shew03400]
    CKQ84_04800
DNA replication proteins [BR:shew03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    CKQ84_04800
Chromosome and associated proteins [BR:shew03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    CKQ84_04800
DNA repair and recombination proteins [BR:shew03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      CKQ84_04800
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2
Other DBs
NCBI-ProteinID: AVI65254
LinkDB
Position
1123357..1123629
AA seq 90 aa
MNKTELIAKIAENADLTKVEAARALKSFEAAITESMKNGDKISIVGFGSFETATRAARTG
RNPQTGKEIQIAEATVPKFKAGKTLRDSVN
NT seq 273 nt   +upstreamnt  +downstreamnt
atgaacaaaactgaactaatcgccaaaattgcagaaaatgccgatctaacgaaagtagaa
gcagcacgcgcattgaagtcttttgaagcagctattaccgaatcaatgaaaaatggtgac
aaaatctccatcgtaggtttcggttcttttgaaacagcgactcgtgccgctcgcactggc
cgtaacccacaaacgggtaaagaaattcaaattgctgaagcgacagtgcctaagtttaaa
gcaggtaaaaccctacgtgacagcgtaaactaa

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