Shewanella sp. WE21: CKQ84_05125
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Entry
CKQ84_05125 CDS
T05404
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03420
Nucleotide excision repair
shew03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKQ84_05125
03430 Mismatch repair
CKQ84_05125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_05125
Enzymes [BR:
shew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKQ84_05125
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKQ84_05125
MMR (mismatch excision repair)
Other MMR factors
CKQ84_05125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
AVI65316
LinkDB
All DBs
Position
complement(1191941..1194109)
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVAGTNMGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQV
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPLEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQDRFKHILVDEFQDTNAIQYAWIRVLAGQT
ANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPSATTIRLEQNYRSKGNILKASNALIANN
PERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKDDDAAFERVVNTPPRGIGD
RTLDILRSTARQHELTLWQASVRLLDEKVLAGRAANSVRGFMDLIMTMREDTQDMVLYRM
ADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFELPEELEDMGELNGFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPSKMALEEGDRLDEERRLCY
VGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVDEIRLKAQVSTPMANNRFS
APKSAATNDTGFNVGQRVNHPKFGEGKVTNFEGSGAQGRVQVSFTDFGSKWLVVAYARLE
AL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactagacggcctgaatgacaagcagcgcgaggctgtcgcggca
ccgcaatctagcatgttagtgttggcgggcgcgggcagtggtaaaactcgggtgttgacc
caccgcattgcgtggctgatgcaggttgaacagcagagtccttactcgattcttgcggtg
acgtttaccaataaagctgcggctgagatgcgcgagcgagttgaaaaagtcgctggcacc
aatatgggccgcatgtggattggcactttccacggcttggcgcatcgtttgttacgcact
cacttccaagatgcgggtttaccgcaaagcttccaaatcctcgattctgacgatcaagtg
cgcttgatcaaacgtattcttaaaagcttgaatttggatgagaaacaatatcctccacgc
caagctcagggttatatcaatggtaaaaaagaccaaggattacgccctaaacatatcgat
gcgggcggttttccgcttgagcagaatctgctaaaaatctatcaggtctaccaagagtct
tgcgaccgcgcgggtttagtcgattttgccgaaatcctattacgtgcccatgagttatgg
ctcaataagccgcacttgttggcccattatcaagacagatttaagcatattttggtggac
gagttccaagataccaacgcgatccaatatgcgtggatccgcgtgcttgccggtcaaact
gccaatgtgatgatagtgggtgatgacgaccaatcgatttacggttggcgcggtgctcag
gttgaaaacctacaccgattcttaaaagatttcccgagtgcgaccacgattcgcctcgag
caaaactatcgctcgaagggcaatatccttaaagcgtccaacgccttaatcgccaataac
ccagaacgtatgggcaaagagttgtggacggatgaagccgatggcgatccgatttcgctc
tattgcgcctttaatgaaatggacgaggcgcgctttattgtcggtcgaattaatgattgg
cacgaaaagggcggcaacctcagtgattgtgcgattttatatcgttctaacgctcagtcg
cgggtattggaagaagccttgttacacaaaggcttagcctatcgcatttacggcggttta
cgcttcttcgaacgccaagaaattaaagatgctatgggttacctgcggctgattaataac
aaagacgacgatgcggcatttgagcgtgtagttaacacaccgcctcgtggcattggcgat
cgcactttggatattttgcgctccacggcgcgccagcatgagttaaccctgtggcaggcg
agtgtgcgtttgctcgacgagaaagtgctcgcgggccgcgcagcaaattctgtgcgtggt
ttcatggacttaatcatgacgatgcgtgaagacacccaagatatggtgctgtatcgcatg
gccgatacagtgatccaagcttcgggccttaaggccatgtatgaagccgaaaagggcgaa
aaagcccacgctagaatcgaaaacttagaagaactcgtcacggcggcgcgtacttttgag
ctaccagaagagctggaggacatgggcgaacttaacggtttcctatcccacgcggcgctc
gaagcgggcgagggccaagccgatgcctttaccgatgcggtgcagctaatgacactgcat
tctgccaaagggttagagttcactatggtgttcatggcgggtgtcgaagaagggatcttc
ccgagtaaaatggcgctcgaagagggcgatagactcgatgaagaacgccgcctctgttat
gtgggcatgacccgcgccatggaaaaactctacattacctatgcggaatcacgccgtatt
tatggccgcgaagattacgcgcggccatcgcgttttatcaaagagattccgccgcaatat
gtggatgaaattcgtctaaaggcgcaggtttcaacgccgatggcgaataatcgttttagc
gccccaaaatcggctgccacaaacgatacgggttttaacgtcggccaacgagtcaatcac
cctaaatttggtgaaggtaaagtgaccaactttgagggcagcggtgcccaagggcgagta
caagtgagctttactgactttggcagcaagtggttagtggtggcttacgctcggttagag
gcgctttaa
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