Shewanella sp. WE21: CKQ84_06695
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Entry
CKQ84_06695 CDS
T05404
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
shew
Shewanella sp. WE21
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shew03021
]
CKQ84_06695 (rpoH)
Transcription machinery [BR:
shew03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CKQ84_06695 (rpoH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Fe_dep_repress
UCR_14kD
2Fe-2S_thioredx
Motif
Other DBs
NCBI-ProteinID:
AVI65599
LinkDB
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Position
complement(1571160..1572017)
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AA seq
285 aa
AA seq
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MTFQTQSMALTVPQGASSLEAYIHSVTSISMLDAEAEYELAKRLQETGDLQAAKQLIMSH
LRFVVHVAKGYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV
LKNWRIVKVATTKAQRKLFFNIRKAKKRLGWFSDAEVTMVAENLGVSKADVTEMESRMAA
QDPAFDLTNDQDEEHDFAPVHYLEDHSSDLAENIENDNWESNAQGRLLSAIKTLDERSQH
ILRARWLDDDKTTLQELAETYQVSAERIRQLEKNAMNKLKACMEA
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgacctttcaaacgcaatcaatggcactgacagtcccacagggcgccagtagtctagaa
gcttatatccattcagtgactagcatcagcatgctggacgctgaggctgagtatgagttg
gccaagcgtttacaggaaactggtgatctacaagctgcgaagcaactgattatgtcgcac
ttacgttttgtagtgcacgttgcaaagggctattcaggctatggtttgccacaggcagat
cttatccaagaaggcaacataggcttgatgaaagcggttaaacgcttcgatcccgatgtt
ggcgtgcgtctagtgtcttttgctgtgcactggatcaaagctgaaattcatgaatatgtg
ctgaaaaactggcgcattgttaaagtcgcgaccactaaagcacaacgtaagttgttcttt
aatatccgtaaagcgaaaaaacgcttaggttggttcagcgatgcagaagtcactatggtg
gctgaaaatttaggtgtgtctaaggccgatgtgaccgaaatggaatcacgtatggcagcg
caagatccggcatttgatttaaccaatgatcaagacgaggagcatgattttgcccccgtc
cattatttggaagatcattcatcggatttagcggaaaatattgaaaacgacaactgggaa
tccaatgctcaaggtcgtttattatcggccatcaaaaccttagatgaacgtagccagcat
attctgcgcgcccgttggttagatgacgataaaaccacactgcaagaacttgcagagact
tatcaagtgtcggccgaacgtattcgccaacttgagaaaaatgccatgaacaagctaaaa
gcttgtatggaagcctaa
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