Shewanella sp. WE21: CKQ84_07365
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Entry
CKQ84_07365 CDS
T05404
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CKQ84_07365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_07365
Enzymes [BR:
shew01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CKQ84_07365
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CKQ84_07365
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CKQ84_07365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF1631
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AVI65727
LinkDB
All DBs
Position
1725571..1726386
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AA seq
271 aa
AA seq
DB search
MPELPEVEVTRQGIAPFLVEQTVVDLVIRNGSLRWPVPDIAKQIIGQVIRQVRRRAKYLL
IDTDAGTSIVHLGMSGSLRILPHDTPVEKHDHIDLVLANGRILRFNDPRRFGAWLWCELP
EEAHPLLAKLGPEPLTHAFNVAQLAAALAGKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPEAEAGKIDIERLTVLVAEVKQILAHAIKQGGTTLKDFTNADGKPGYFAQKLHVYGR
GGETCTSCGNLLSEIRLGQRTTVFCGICQTR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccagaagttgaagtcacccgtcagggtattgcacccttccttgtcgag
caaaccgtggttgatcttgtgatccgcaatggttcgctgcgctggccagtgcctgacatc
gccaaacaaattatcggccaagtcatacgccaagtgcgacgccgtgctaaatatctgtta
atcgacactgatgcgggcactagcatagtgcatttaggcatgtcggggagtttacggatt
ttgccccacgataccccagtggaaaagcatgaccatatcgacttagtgctcgccaacggc
cgcattttacgttttaacgatccaagacgattcggtgcttggctatggtgtgaactccca
gaagaagcccatccattactcgccaaactggggccggagccactgacccatgcctttaat
gtcgcacaattagcggcagctttagcgggcaagaaaaaagcgatcaagctctgcctgatg
gataatcatatcgtagtgggtgtaggcaatatttacgccaatgaggccttgtttgcggcg
ggtattcatccagaggccgaagcaggtaaaatcgatatcgagcgtttgaccgttttagtt
gccgaagtgaagcaaatcttagcccacgccattaaacagggtggcaccacgctgaaagac
ttcaccaatgccgatggcaagccgggctacttcgcccaaaaactgcatgtctatggtcgc
ggcggtgaaacctgcacaagctgcggtaacttgctaagtgaaatccgtttaggccaacgc
accacagtattttgtggcatttgccaaacacgctaa
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