Shewanella sp. WE21: CKQ84_07825
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Entry
CKQ84_07825 CDS
T05404
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
shew
Shewanella sp. WE21
Pathway
shew00071
Fatty acid degradation
shew00280
Valine, leucine and isoleucine degradation
shew00310
Lysine degradation
shew00362
Benzoate degradation
shew00380
Tryptophan metabolism
shew00410
beta-Alanine metabolism
shew00640
Propanoate metabolism
shew00650
Butanoate metabolism
shew00907
Pinene, camphor and geraniol degradation
shew00930
Caprolactam degradation
shew01100
Metabolic pathways
shew01110
Biosynthesis of secondary metabolites
shew01120
Microbial metabolism in diverse environments
shew01200
Carbon metabolism
shew01212
Fatty acid metabolism
Module
shew_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
CKQ84_07825 (fadB)
00650 Butanoate metabolism
CKQ84_07825 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
CKQ84_07825 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
CKQ84_07825 (fadB)
00310 Lysine degradation
CKQ84_07825 (fadB)
00380 Tryptophan metabolism
CKQ84_07825 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
CKQ84_07825 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
CKQ84_07825 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
CKQ84_07825 (fadB)
00930 Caprolactam degradation
CKQ84_07825 (fadB)
Enzymes [BR:
shew01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
CKQ84_07825 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
CKQ84_07825 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
CKQ84_07825 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
CKQ84_07825 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
AVI65812
LinkDB
All DBs
Position
complement(1834022..1836172)
Genome browser
AA seq
716 aa
AA seq
DB search
MIYQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQNSNIKALVLTSS
KDTFIVGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCET
ILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGNDQRAEDALK
VGAVDAVVAPEALEAAAIQMLKDAVAEKLDWQARRNRKLSALTLPKLEAMMSFTTAKGMV
FAVAGKHYPAPMAAVSVIEQASTKGRTEALQIEHQAFIKLAKTDVAKALIGIFLNDQFVK
GKAKKAGKLAKEVKNAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQPALDLGLNEAAKLL
SAQVARGRSTPEKMAKVLNNITPSLDYAALKHSDVVVEAVVEHPKIKAQVLAEVEGYVSE
DAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAY
ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYL
LDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNGKGFYVYSVDSRGKP
KKDVDPTSYGLLKAAFGELKVFEADDIIARTMIPMIIETVRCLEEGIVASPAEADMGLVY
GLGFPPFRGGVFRYLDTMGVANFVALADKYAHLGGLYQVTDAMRTLAANNGSYYQA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgatctaccaaagtcctacaattcaagttgagttactcgaggataatattgccaagctg
tgctttaacgcacccggttcggtgaacaaattcgacagagaaaccctcgcttcgctcgat
gccgcattagacagcatcaagcaaaattccaatatcaaagcgttagtgctgacctccagt
aaagatacctttattgtgggtgccgacattaccgaatttttaggcctattcgcacaagat
gacgccgtactgctctcttgggttgaacaagccaacgctgtcttcaacaaactcgaagac
ttacctttcccaacagcatctgcaatcaaaggctttgccttaggtggcggctgtgaaacc
attctggcaacggattttcgtatcgcagataccacagccaaaatcggtttacctgaaact
aaactcggcatcatcccaggctttggcggcacagttcgtctgccacgtgtgattggtgca
gataacgcacttgaatggatcaccacaggtaacgaccaacgcgctgaagatgcactgaaa
gtcggtgctgtggatgctgtggttgcgccagaagcattagaagcggctgcgattcaaatg
ctcaaagatgctgttgctgaaaagttggattggcaagcgcgtcgtaaccgcaagctgtct
gcactaacactgccaaaacttgaagctatgatgtcattcaccacagccaaaggcatggtg
tttgcggttgcgggtaaacactaccctgcaccaatggccgcagtaagcgtaattgagcaa
gcatcaactaaaggccgcaccgaagcactgcaaatcgagcatcaagcctttatcaaactg
gctaaaactgacgttgctaaagcgcttatcggtatcttccttaatgatcaattcgttaaa
ggcaaagcgaaaaaagcgggtaaattagccaaagaagtgaaaaacgctgccgtattaggt
gctggcattatgggcggcggtatcgcctaccaaagcgccagcaaaggcacaccgattgtc
atgaaagacattgcccagccagcattagatttaggcctcaatgaagccgccaaactgctg
tctgcccaagttgctcgtggtcgttcaacgccagaaaaaatggccaaagtgctgaacaac
atcacgccttcattagattatgctgcgctcaaacacagtgatgtcgtcgttgaagccgtt
gttgaacatccaaaaattaaagcacaggttttagccgaagttgaaggctatgtgagtgaa
gatgcaattatcgcgtcaaacacctcaacgatttcaatcaacttgctcgctaagagcatg
aagaaacctgagcgtttctgcggtatgcatttcttcaacccagtgcacaaaatgccgttg
gtagaagttatccgtggtgagcacagttctgaagaaaccatcgcctctgttgtggcttac
gccagcaaaatgggcaaaaccccaatcgtggtaaacgattgcccaggcttcttcgttaac
cgcgtactcttcccttactttgcaggctttaacggcttacttgccgaaggtggcgacttt
gctgcaatcgacaaagtaatggaaaaacaattcggttggccaatgggccctgcttacctg
ctcgacgtagtgggtttagacacaggtcatcacgcccaagccgttatggctgaaggtttc
cctgatcgcatgggtaaatcaggcactgatgcgattgatgtgatgtttgagaacaaacgt
cttggccagaaaaatggcaaaggtttctatgtctattcagtcgatagccgtggtaaaccg
aagaaagatgtcgatccaacgagctacggcctattgaaagctgcctttggcgaattaaaa
gtctttgaagccgatgacattattgctcgtactatgatccctatgatcatcgaaaccgtg
cgctgtttagaagaaggtattgtcgcatcaccagccgaagcggatatgggcctagtttat
ggcttaggtttcccgccattcagaggcggcgtgttccgttatttggataccatgggtgtc
gcaaactttgtggccttagcagacaaatatgctcacttgggcggtctgtatcaagtcaca
gatgcgatgcgtacattagcagccaataacggtagctactaccaagcctaa
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