Shewanella sp. WE21: CKQ84_09250
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Entry
CKQ84_09250 CDS
T05404
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CKQ84_09250 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shew03021
]
CKQ84_09250 (rpoC)
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_09250 (rpoC)
Enzymes [BR:
shew01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CKQ84_09250 (rpoC)
Transcription machinery [BR:
shew03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CKQ84_09250 (rpoC)
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CKQ84_09250 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
gerPA
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AVI66037
LinkDB
All DBs
Position
2173670..2177887
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLAKEIEQMREELPSINSETRRKKVTKRLKLMEAFYTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMAFMSVAEVEKAYATG
AAELHARVKVRITETIIGDDGERTEQRRIVDTTVGRALLSLILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAIDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVISCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKHVTNSDGKLVIVSRSSELAVIDELGREKERYKVPYGTVLEKLEEAAVEAGDVIANW
DPHTHPIISEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGTAGKEMRPMIRL
LGANGADLMIPGTEVPAQYFLPGSAIVNLEDNAQINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGDHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSAGDTDFLEGEQAEVSRVKIANRELIAQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDQLRGLKENVIVGRLIPAGTGYAYHKTRNEARAKKNEPV
VVNKITASEAEQNLADLLNLAGSQD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccatcaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccagtcaaagattacgaatgtttgtgcggtaagtacaaacgtttgaagcac
cgtggtgttatttgtgaaaagtgtggcgttgaagtaacccaaactaaagtacgtcgtgag
cgtatgggtcacatcgaactggctagcccagttgcgcacatttggttcttaaaatcactg
ccttcacgtattggcttaatgctggatatgacgctgcgtgatatcgaacgcgtactgtat
tttgaatcatttgtcgtgatcgagcctggcatgaccagccttgaacgtggccaaatgctg
acagaagaaacttatctggatgcattagaagaatacggtgatgagttcgaagctaaaatg
ggtgccgaagcagtacttgaactgttacgtgctatcgatttagcgaaagaaatcgaacaa
atgcgtgaagaattgccttcaatcaactctgagactcgtcgcaagaaagtgactaaacgt
cttaagttgatggaagcattctacacttcaggcaacaagcctgagtggatgatcttaaaa
gtactgcctgtgttaccacctgacttacgtccgttggttccgctcgatggcggccgcttc
gcgacttcagatcttaacgacctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccagacattatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgctattaccggttctaac
aagcgtcctctgaaatctttggctgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgttaggtaagcgcgtcgactattctggtcgttcggtaattaccgtaggtcctact
ctacgtctacaccaatgtggtcttcctaagaagatggcactggaactgttcaagccattc
atctatggcaagctagaaggtcgtggcttagcgactaccatcaaagcggctaagaagatg
gttgagcgtgaagtggcggaagtttgggacgttctggatgaagtgatccgcgaacatcca
gtgatgctcaaccgtgcaccaacactgcacagactgggtatccaagcgttcgaacctgta
ctgattgaaggtaaagccatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagcc
cgtgccctgatgatgtctaccaacaacatcctgtcaccagccaacggcgagcctgttatc
accccgtctcaagacgtggtattgggtctgtactacaccagccgtgagcgtattaacggc
cgtggtgaaggtatggcatttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgcgttaaagttcgtatcactgaaaccattattggtgacgat
ggtgagcgcactgaacaacgccgtatcgttgatacgactgtgggtcgtgctctgctgtca
cttattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atctctaaactgttgaacacctgttatcgtcaactgggtctgaaagatactgttatcttc
gctgaccaattgatgtataccggtttccgttttgcaaccatctctggtgcctctgtcggt
atcgatgacatggttattccagacgagaaatacaccttagttgctgatgcagaagcggaa
gttcttgaaattcaagagcagttccaatctggtctagtcacagctggtgagcgttacaac
aaagttatcgatatctgggcaagtgccaacgaaaaagtttctaaagctatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggtgttgaagagaaacaagcctcgtttaac
agcatctatatgatggctgactcaggcgctcgtggtagtgccgcacagatccgtcagttg
gcgggtatgcgtggtctgatggctaagccagacggctcaatcatcgaaacgccaattacc
gctaacttccgtgaaggtctaaacgtactccagtactttatttctactcacggtgcgcgt
aaaggtctagccgatacggcattgaagacagcgaactcgggttacctgactcgtcgtctt
gtagacgttgcacaagatttagtggttatcgaagacgattgtggtactcacgaaggtcta
accatgaaaccgctgattgaaggtggtgatgtggttgagccgttacgtgaacgcgtactg
ggtcgtgtggttgcgattgatgtgttctatccaggcactgaagacgtattagcaccacgt
aacacgctacttgacgaagcatggtgtgacaagttagaagagcattcaatcgacgaagtg
attgtacgttctgttatttcttgtgataccgatttcggtgtgtgtgcagcttgttacggt
cgtgacttggctcgtggtcatattattaaccacggtgaagccatcggtgttgtggcagca
caatctatcggtgaaccaggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatctagagcgtctgcagaaaacaatgtccaagtgaaaaactcgggctcattgaaactg
cataatgctaagcatgttactaacagtgacggcaaactggttatcgtttctcgttcttct
gaactggctgttattgacgagctgggtcgtgagaaagagcgttataaagtgccatacggt
actgtgctcgagaaactagaagaagcggctgttgaagcgggcgatgttatcgctaactgg
gatccacatactcacccaatcatttctgaagtggcgggtagtattaagttcgtagacatg
attgacggtgttactatgacacgtcaaacagacgaactaacgggtctgtcatcaatcgtg
atccttgacgttggtcagcgtggtactgcgggtaaagaaatgcgcccaatgatccgtctg
cttggcgctaatggtgctgacttgatgatcccaggtactgaagtaccagcacaatacttc
ttaccaggtagtgcgatcgttaacttagaagataacgcgcaaatcaacgtaggtgacgca
ttagctcgtattcctcaggaatcgtctaaaactcgcgacatcaccggtggtctgccacgc
gttgctgacttgttcgaagcgcgtaagccaaaagagcctgctattctggcggaaatctct
ggtaccatctcgtttggtaaagagaccaaaggtaagcgtcgtttggtgattacacctgct
gatggcggcgatcattatgaagagatgatccctaagtggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttatcgctgacggtccagaagcagcgcacgacatt
ctgcgtcttcgtggtatccacaacgtagcaaactacattgtgaacgaagtacaggacgtt
taccgtctgcaaggcgtgaagatcaacgataagcatatcgaagtgatcatccgtcagatg
ctgcgtaagtgtcttatcacttctgccggtgacactgacttcctcgaaggcgagcaagct
gaagtgtcacgcgtgaagattgctaaccgcgaactgatcgcccaaggtaaagtgcctgcg
acctttgaacgtgaactactgggtattactaaagcatctctggcaacagaatcctttatc
tcagcagcatcgttccaagaaacgacgcgcgtactgaccgaagccgccgtaggtggtaag
agcgatcaattacgtggtctgaaagaaaacgttatcgttggccgactgatcccagctggt
actggttacgcttatcacaagactcgtaatgaagcgcgtgcgaagaaaaacgaacctgta
gtagtgaacaagatcactgcaagtgaagccgaacagaacttggccgatctcttaaacttg
gctggtagccaagattaa
DBGET
integrated database retrieval system
