Shewanella sp. WE21: CKQ84_10290
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Entry
CKQ84_10290 CDS
T05404
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKQ84_10290 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shew03019
]
CKQ84_10290 (recQ)
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_10290 (recQ)
Enzymes [BR:
shew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKQ84_10290 (recQ)
Messenger RNA biogenesis [BR:
shew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKQ84_10290 (recQ)
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CKQ84_10290 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CpeT
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AVI66228
LinkDB
All DBs
Position
2372452..2374275
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AA seq
607 aa
AA seq
DB search
MEKLVLDTHDDPLSQRLAQVFGYRDFRDGQREVIERVCGGQDCLVIMPTGGGKSLCYQLP
ALLMNGITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLY
VSPERLLTADFIERMQSLQLAMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPYVPMMAL
TATADQATRQSICERLGIDPFRLLSSFDRPNIRYTVAEKLNAANQLRHFLTQQNGTNGII
YCSSRRRVDEVADRLCLQGFNAKAYHAGMTQEDRGAVQDSFLKDQIDIVVATVAFGMGIN
KSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLIEQSEPGPQQ
QVEFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGTEDAQKVLS
CIFRLGQRFGINHLIEVMRGSKGAPIVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGL
ASQDVTRGSSITLNPSARPVLKGDVALMLAEPRIQLTTTKRKASQSKAPLNYDRKLFARL
KLLRRTIAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDAFLDEI
AAYLAGE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagctcgtactcgacacgcatgatgatccgctctcgcaacgcctcgcacaggtg
tttggttaccgtgactttagggacggtcagcgggaggtgatagaacgtgtctgtggcggg
caagattgcttagtgatcatgccaacgggcggcggtaagagtctttgctatcaactcccc
gcgttgctgatgaatggcatcactattgtcgtatctccattgatttctttgatgaaagat
caagtcgatagcttgttgcaaaccggtgttgctgcggcttatctgaattcttctttgccg
cgcgagcagagtgccgaagtattaaggcagctacgccacggtgagttaaaactactttat
gtgtcacctgagcgcttattaaccgctgattttattgagcgtatgcagtcgctccagttg
gcgatgtttgccattgatgaggcgcattgtatcagtcagtggggccatgattttcgccct
gaatatgcggcgctcggccagctaaaacaactcttcccctatgtgcccatgatggcgctg
accgcaacagcagatcaggcgactcggcagagtatttgtgagcggctcggtattgacccg
ttccgtttactttcaagtttcgatcggcccaatattcgctatacagtcgccgaaaagctt
aatgcagctaatcagttacgacattttttaacgcagcagaatggcactaacggcattatt
tattgcagcagtcgccgccgtgtcgatgaagtggctgaccgtttatgcctgcaaggtttt
aatgccaaggcctatcatgcaggaatgacgcaggaagaccgtggtgcagtacaggatagt
ttccttaaagatcaaattgatattgtggttgccactgtggcttttggtatggggattaat
aagtcgaatgtgcgctttgtagtgcattacgatatcccgaaaagtatcgaagcctattat
caggaaacgggccgagcaggacgtgatgggctcgatgcagaagcttttatgttgttcgat
cccgccgatattggtcgggtgcgacatttgattgaacagtccgagccaggaccgcagcaa
caggtcgaattccacaaacttaatactatggctgcctttgctgaggcgcagacctgtcgc
cgccaagtgttgctgcattactttgatgagagtgcattagagccctgtggtaactgcgac
atttgcctcgacccgcctaagcgttataacggcaccgaagatgcgcagaaggtgctgtca
tgtattttccgtttaggccagcgttttggtatcaatcatttaattgaagtgatgcgcggt
tcgaaaggcgcgccgatagtcgatcgagggcatgacaaactcacgacttgggggattggt
aaagacaagagccatgaatattggttgagtgtgatccgccaactcattcatctgggactg
gcgagtcaagatgtgacccgcggctcatctattaccttaaacccatcggcacggcctgtg
ctcaaaggtgacgtagcgttaatgctcgccgaaccgcgtattcagttaacaaccacaaaa
cgtaaggcgagtcagtctaaagcaccgttgaattatgaccgtaagttgttcgcacggttg
aagttattgcgtagaaccattgccgagcagcaggatgtgccgccgtatttagtctttaac
gacgctaccctcgcagaaatggcagccatgatgccaacgagcgcgggggaaatgctcgca
gtcaacggagtgggcgagcgtaaactgagccgtttcggtgacgcttttctcgatgaaatc
gcggcttatttagcgggagaataa
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