Shewanella sp. WE21: CKQ84_11195
Help
Entry
CKQ84_11195 CDS
T05404
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKQ84_11195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shew03019
]
CKQ84_11195
03009 Ribosome biogenesis [BR:
shew03009
]
CKQ84_11195
Enzymes [BR:
shew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKQ84_11195
Messenger RNA biogenesis [BR:
shew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKQ84_11195
Ribosome biogenesis [BR:
shew03009
]
Prokaryotic type
rRNA helicases
CKQ84_11195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AVI66396
LinkDB
All DBs
Position
complement(2575891..2577813)
Genome browser
AA seq
640 aa
AA seq
DB search
MSSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSER
QLALFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLE
VENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE
RSTNSRISPMKIPSPETVAERRLSRLGEQLAETINGDLDFMKEAVAQLCQQLEVDTDLLA
AALLQQVQQERPLQLPAIQERVRDERSERTERSDRGSDRNDRGGERGERRSREPRPMPAS
LGSAEALKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTV
DLPDGMPKDVLQHLRKVRVCGKPLNIREAGDQVFVDSGRSARSDRPAGDRKPRGDRPTGD
RPAGDRKPRAASTGDKPFADRKPRADKPAGERKPRKPRED
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgatgaaagaactttccgtgaactcggcctatccgagaatttgttgcgtgct
cttgacgagctaggttatgaaaaaccaacgccaatccaatcagccagtatcgatccactt
atggctggcaaagatattttaggtcaagcgcaaacaggtacaggtaaaactggcgccttc
gcgctgccgctattgaacaaggtcaccagccaaactacaccgcaaattttagtattagcg
ccaacgcgtgaattagcggttcaggttgccgaagcattcagtagctatgccaaatttatg
aagaatttccacgttctgccaatttacggcggtcaaagcatgcaacaacagttgaatgcc
ctgaaacgcggcccacaagttatcgttggtacgcctggtcgtgtaatggaccatatgcgt
cgcggcaccttgaaactcgattcattacaagccttagtgctcgatgaagccgatgaaatg
ttaaaaatgggcttcatcgatgatatcgaatggatccttgagcacacgccaagcgaacgc
caactggcgttattctctgccactatgccagagcaaattaagcgtgttgctaaccagcac
ttacgtaatcctgtacatgttcgtatcgaatcaagccaaactacggttgagtcaatcgaa
cagcgtttcgtacaagtatcacaacacaacaaacttgaagctttagtacgtgtattagaa
gttgaaaacactgaaggtgtgatcatattcgtgcgtactcgtaactcatgtgttgagtta
gctgagaagttagaagcccgcggttatgcttcatcaccactacacggtgacatgaaccag
caagcccgtgagcgtgcagttgaccaactgaaacgtggcaagttagacattctgatcgcg
actgacgttgcggcccgtggtcttgacgttgagcgtatcggtcacgttgtgaactacgat
attccgtatgatgccgaagcttatgtacaccgtattggccgtacaggccgtgctggccgt
actggtatggcgatcctgtttgtgactagccgtgaaatgcgcatgctgcgcactatcgaa
cgctcaactaacagccgtatttcaccgatgaaaatcccaagcccagagactgttgcagaa
cgtcgtctgtctcgcttaggtgagcaattggctgaaacaatcaacggcgatttagatttc
atgaaagaagctgttgctcaattatgccaacagttagaagtcgataccgatctgctagcc
gctgcattattacagcaagttcagcaagaacgtcctttgcaattgccagccattcaagaa
cgtgttcgtgatgaacgcagtgagcgcactgaacgtagcgaccgcggaagtgatcgtaat
gaccgtggtggtgagcgtggtgaacgcagaagtcgcgaaccgcgtccaatgccagcaagc
ttaggctcagctgaagcgttgaaagacaacccagatttaaaaatgtgccgttacgtgatc
gacgtaggtcgtgagaatggtgtaggtgtgggtaacatcgttggcgctatcgcgaacgaa
gctaacatcgacagccgttacattggcgcaatccaactttacgatgcagtgaccactgtt
gacctgccagacggcatgccaaaagacgtgttacagcacctacgtaaagtacgtgtttgt
ggcaagccattgaacatccgcgaagctggcgatcaagtatttgttgattcaggccgcagt
gctcgttcagaccgtcctgctggtgaccgtaaaccacgtggcgatcgtccaacaggtgac
cgcccagcgggtgatcgtaagcctcgcgctgcgtctactggtgataagccatttgctgac
cgcaaaccacgtgcagacaaacctgccggtgagcgtaagccacgtaaaccacgtgaagac
taa
DBGET
integrated database retrieval system
