Shewanella sp. WE21: CKQ84_11400
Help
Entry
CKQ84_11400 CDS
T05404
Symbol
groL
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKQ84_11400 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shew03019
]
CKQ84_11400 (groL)
03110 Chaperones and folding catalysts [BR:
shew03110
]
CKQ84_11400 (groL)
03029 Mitochondrial biogenesis [BR:
shew03029
]
CKQ84_11400 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shew04147
]
CKQ84_11400 (groL)
Enzymes [BR:
shew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
CKQ84_11400 (groL)
Messenger RNA biogenesis [BR:
shew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
CKQ84_11400 (groL)
Chaperones and folding catalysts [BR:
shew03110
]
Heat shock proteins
HSP60 / Chaperonin
CKQ84_11400 (groL)
Mitochondrial biogenesis [BR:
shew03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
CKQ84_11400 (groL)
Exosome [BR:
shew04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
CKQ84_11400 (groL)
Exosomal proteins of other body fluids (saliva and urine)
CKQ84_11400 (groL)
Exosomal proteins of breast cancer cells
CKQ84_11400 (groL)
Exosomal proteins of colorectal cancer cells
CKQ84_11400 (groL)
Exosomal proteins of bladder cancer cells
CKQ84_11400 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
AVI66434
LinkDB
All DBs
Position
2640236..2641864
Genome browser
AA seq
542 aa
AA seq
DB search
MAAKEVVFGNDARVRMLAGVNILANAVKVTLGPKGRNVVLDKSFGSPLITKDGVSVAKEI
ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVVEGLKAVAAGMNPMDLKRGI
DKAVIAAVAELKALSQPCADSKAIAQVATISANSDESIGEIIATAMEKVGKEGVITVEEG
QALENELDVVEGMQFDRGYLSPYFINKPETGSVELDHPFVLLVDKKISNIRELLPILEGL
AKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTV
IAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGEQTQIAARVSQIKQQVEESTSDY
DKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALV
RVASKIADVEVLNEDQKHGVVIALRAMEAPLRQIATNAGEEASVVANTVKNGSGNFGYNA
GNDTYGDMLEMGILDPTKVTRCALQFAASIAGLMITTEAMVAEIPQNASQDMGGMGGMGG
MM
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaagaagttgtatttggtaatgacgctcgcgtaagaatgctggctggcgta
aacattctcgcaaacgcagttaaagtgaccttaggccctaaaggccgtaacgtggtatta
gacaagagctttggctcaccactgatcactaaagacggtgtttctgttgccaaagaaatc
gagttagaagacaaattcgaaaacatgggcgcgcaaatggtgaaagaagttgcttctaaa
gccaacgacgccgccggtgatggtactactactgcaactgtactggctcaagccattgtc
gttgaaggcttaaaagccgttgcagccggtatgaacccaatggatctgaagcgcggtatc
gacaaagccgttatcgctgcagtggctgaattaaaagccttatcacaaccttgtgcagat
tcaaaagcgattgcgcaagttgcgactatctctgcaaactctgacgaatctatcggcgaa
atcatcgcaactgcgatggaaaaagtcggtaaagaaggcgtgatcacagttgaagaaggc
caagcgttagaaaacgaattggacgtagtagaaggtatgcagtttgaccgtggctaccta
tctccatacttcatcaacaagccagaaacgggcagcgttgaattagatcacccattcgta
ctgttagtagataagaaaatctctaacattcgcgaactgttacctatccttgaaggtctg
gcaaaaaccggtaagccattgcttatcgttgctgaagacgttgaaggcgaagcattagca
actttagttgtgaacaacatgcgcggtatcgtgaaagtggctgctgttaaagcacctggc
tttggcgatcgtcgtaaggcaatgctgcaagacgtagcaatcctgactggcggtactgta
attgctgaagaaatcggcctagagcttgaaaaagcaaccctggaagatttaggtacagct
aagcgtgttgtgatcactaaagacaacaccaccatcatcgatggtaacggcgagcaaaca
caaattgctgctcgtgtaagccaaatcaaacaacaagttgaagaatcaacgtcagactac
gacaaagaaaaactgcaagaacgtatggctaaactagctggcggcgtagcagtgattaaa
gttggcgcagcgactgaagttgaaatgaaagagaaaaaagcccgcgttgaagatgcactg
catgcaactcgcgctgcggtagaagaaggcgtggttcctggcggcggtgttgctctggtt
cgcgtagcttctaagatcgctgacgttgaagtattaaacgaagaccaaaaacacggtgtg
gttatcgcactacgtgcaatggaagcgccactgcgtcaaatcgccactaacgcgggtgag
gaagcgtcagttgttgctaacacagtgaagaacggcagcggtaacttcggttacaacgcc
ggtaatgacacttacggtgatatgttagaaatgggtatccttgacccaactaaagtgacc
cgttgtgcattgcaattcgctgcgtcaatcgcaggtctgatgatcactacagaagctatg
gttgctgagatcccacaaaatgctagccaagatatgggcggtatgggtgggatgggcggc
atgatgtaa
DBGET
integrated database retrieval system
