Shewanella sp. WE21: CKQ84_12465
Help
Entry
CKQ84_12465 CDS
T05404
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
shew
Shewanella sp. WE21
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shew03009
]
CKQ84_12465
Enzymes [BR:
shew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CKQ84_12465
Ribosome biogenesis [BR:
shew03009
]
Prokaryotic type
rRNA helicases
CKQ84_12465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_30
AAA_19
Helicase_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVI68689
LinkDB
All DBs
Position
2859351..2860727
Genome browser
AA seq
458 aa
AA seq
DB search
MAFATLKLKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLL
NKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHG
AHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLL
FSATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKP
ESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVA
ARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLE
REITSESLPSESLLGNTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQ
VTDYRAYVAVNRKVAKKALNKITGGRIKGKSYRAWPMK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgcgactcttaagctaaaacccgaactgcttgagaacctttcttctatgggc
tacaacgagatgacgccaattcaggcgcaaagtttgccacccattttagcggggcaggat
gtgataggtcagggtaaaactggctcgggtaaaacggccgcctttggcttagggttactg
aacaagttagacgttaaacgctttcgcattcaaaccttagtgttatgcccaacccgcgag
ttggccgaccaagtggcgcaggaaatccgcacccttgcccgtggtattcataacgttaaa
gtactgacactttgcggcggtgtacctatgggaccacaggttggctcgctggaacacggt
gcacacattattgtgggtacgccgggtcgtatcgtcgatcacttagatcgcaatcgtcta
gatttaagcaatctcaacatgttagtgctcgatgaagccgatcgcatgttagaaatgggc
ttccaacccgctctagatgcgattatcgaacaagcgccacgtgagcgtcagacgttgcta
ttcagcgcgacgttccctgagcaaattcaatcaattgccaagcaaatcatgtatgaccca
agcatggttaaagttgaaggtaatcacgacagcttgagcatcgcccaacatttttatcat
ttagacgatgacaaggcgcgtatgcaagcgctgcaattattgttgttagaacataagcct
gaaagcgcagtggtgttctgtaacactaaacgcgaaacccaaaaagtggccgatgagctt
gaaggtttaggctttagcgtattggctttgcacggtgatttagagcaaagagacagggac
gaaaccctgctgcaatttgctaacaagagtgcctgtgtcttagtggcgactgacgttgct
gcccgtggtttagatatcgatgcgctcgatgccgtgtttaactatcacgtcgcctatgac
accgaagtgcatattcaccgcatcggtcgtactggccgtgcgggcagtaaaggcgccgct
tataccttctataacgaccaagacggttacaaaattgccttgttagaagagtatttagag
cgcgaaattaccagcgaatcactaccatcagaaagtctgctcggcaacacgcctgcagcg
ccaaccatgatcactctgcagatcgatggtggtaagaaggaaaagctgcgtccaggggat
atcttaggcgcgctgacaggcgaaaacggtatcgaaggctcacaggtgggtaaaatccaa
gtgaccgattaccgcgcctatgtggccgttaatcgtaaggttgccaagaaagcactgaac
aaaattactggcggccgcattaaaggaaaatcttaccgcgcttggccaatgaagtaa
DBGET
integrated database retrieval system
