Shewanella sp. WE21: CKQ84_14370
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Entry
CKQ84_14370 CDS
T05404
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
shew
Shewanella sp. WE21
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shew03016
]
CKQ84_14370
Enzymes [BR:
shew01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
CKQ84_14370
Transfer RNA biogenesis [BR:
shew03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CKQ84_14370
Prokaryotic type
CKQ84_14370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AVI66972
LinkDB
All DBs
Position
3285056..3286171
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AA seq
371 aa
AA seq
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MSELHYLYGKPLGTADLRTQNSDFIVKEILPFSPTGEGEHHMLHVRKEGLNTVQVAEMIA
KFAKVHPKEVTYAGQKDKNAITEQWFGVRIPGKETPTWKELNSDRLTILSSSRHSKKLRI
GALVGNRFILTLRNVTQVEDIIIRIEKVAQVGVPNYFGEQRFGHDGKNLVFGRQMMAGKK
VKDRNKRSMYLSAVRSNLFNTVVSYRLANHGTKPLAGDCVMLAGSKSFFVTPEWDLIVLK
RLIEKDIQLSAPLWGRGMMLPQGEAAAVETLAMSELADDCYGLEHAGLEQERRPLLLEPQ
GLKYEQTADGLVLEFVLPAGSFATSLLRELVNYQDVKEQQWQATLVQEPAPEVINANVVA
NIDTVKTEAES
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaattacattatctgtatggtaagcctttaggtacagcagatctaagaacccaa
aatagcgattttatcgtgaaagagattttgccttttagcccgacgggtgaaggtgaacat
catatgctgcatgtacgcaaagaagggctaaatacagtacaagtcgctgaaatgatcgct
aagttcgctaaggtgcatccaaaggaagtcacctacgctgggcaaaaagataaaaatgcc
atcacagaacagtggttcggggtgcgtattccaggtaaagaaacgcctacttggaaggag
ctcaatagcgatcgtttgaccatattgtcgagcagccgccacagcaagaaactgcgaatt
ggtgccttagtcggtaaccgctttattcttaccctgagaaatgtcacccaagtggaagac
attatcattcgtatcgaaaaggtcgctcaagtgggcgtgcccaattactttggtgagcag
cgctttggtcatgatggcaaaaacttagtgtttggtcgccaaatgatggcgggtaaaaaa
gtgaaagacagaaataagcgcagcatgtatttgtctgccgtgcgctcaaatctgtttaac
actgtagtgtcgtaccgattagccaaccatggcactaagcctttagcgggtgattgtgtg
atgttagcgggcagcaaaagcttctttgttacgcctgaatgggatctcatcgtattgaag
cgtctgattgaaaaagacattcaactttctgcaccattgtgggggcgcggcatgatgtta
ccccaaggtgaagctgctgcggtggaaaccttagccatgagtgagttagctgacgattgc
tatggtttagagcacgccggattagagcaagaacgccgtccgttactgcttgagccccaa
ggccttaaatacgaacaaaccgccgatggcttagtgctggagtttgtgttgcctgcgggc
agttttgcaacatcgttattgagagagttggttaattatcaagatgttaaagagcagcaa
tggcaagctacattggtgcaggagcctgcgcctgaggtaattaacgctaacgtagtggct
aacattgatactgttaagactgaagcagagtcatga
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