Shewanella sp. WE21: CKQ84_14390
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Entry
CKQ84_14390 CDS
T05404
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
shew
Shewanella sp. WE21
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shew03021
]
CKQ84_14390
Transcription machinery [BR:
shew03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CKQ84_14390
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
MarR_2
Put_DNA-bind_N
Fe_dep_repress
IF2_N
HTH_11
HNH_repeat
Gp44-like_2nd
MarR
DUF2316
Motif
Other DBs
NCBI-ProteinID:
AVI66976
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All DBs
Position
3288626..3289606
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AA seq
326 aa
AA seq
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MSRINSTAAEALVDFSVETVDFDLEKEEVATDLVQELGIEQQVQDDLQKNLDATQLYLGE
IGFSPLLSAEEEVYFSRKALKGCAKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGN
LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARE
LAQKLDHEPTAEEIAEKLQVSSSDVSRMLKLNEKITSVDTPLGGDNEKALLDVLADDDSV
GPDYKVQDEDISNSVVKWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQ
IQVEALKRLRDLLGSQGLSVEALFRN
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcataaatagcactgccgcagaagcactagtagatttttccgtagaaaccgta
gactttgatcttgaaaaagaagaagttgccaccgatctagtccaagagctaggaatagaa
caacaggtccaagatgacctgcaaaaaaatcttgatgctactcaactttatctaggtgag
attggtttttccccacttcttagcgcagaagaagaagtttacttttcccgtaaggcctta
aaaggttgtgcaaaatcccgtaatcgcatgatcgaaagtaatttacgtctcgtcgtaaaa
attgcacgtcgttacaataaccgcggcttagcactgctcgatcttatcgaagagggtaat
ttaggtttaattcgtgccgtagaaaagtttgacccagaaagaggttttcgtttttcaacc
tatgcgacttggtggatcagacagacgattgaacgcgctatcatgaatcaaactcgtact
attcgtttgccgattcatgttgttaaagaactcaacgtatacttgcgcacagcccgcgaa
ttagcacaaaaactggatcatgaacctacagcggaagaaattgctgaaaaactgcaagtt
tctagctctgatgtgagccgcatgcttaagctgaatgaaaaaattacctctgttgatacg
cctttggggggcgataacgagaaagcattattagatgtattggccgatgatgatagtgtt
ggccctgactataaagtgcaagatgaagacatctctaactcggtggtgaaatggcttaac
gagttgaacacaaaacaaagagaagtattagcccgtcgttttggtttgttaggttatgaa
ccttctacgcttgaagatgttggggctgaaattggtttaacccgtgaacgtgttcgtcaa
atccaagtggaagcattaaaacgcttacgtgatttattgggttctcaaggtttatctgtt
gaagctttatttagaaactaa
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