Shewanella sp. WE21: CKQ84_14580
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Entry
CKQ84_14580 CDS
T05404
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKQ84_14580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shew03019
]
CKQ84_14580
Enzymes [BR:
shew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKQ84_14580
Messenger RNA biogenesis [BR:
shew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKQ84_14580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
P-loop_SecA
AAA_19
AAA_22
AroM
Gag_p24
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AVI67003
LinkDB
All DBs
Position
complement(3325234..3326535)
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AA seq
433 aa
AA seq
DB search
MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL
QKMVEKPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK
LKRGADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR
QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG
KKNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRVLVA
TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIE
KLIGQQIRRVTVPGYEVGSRELLLKQLQTRRSFAKKQQRTDNVGAQVAAEKNMQGRRVKM
KVGQAPSKAKKLK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaatcttttagtttttcccccgagattttgcgcgctatctcagattgcggt
tatcaacaaatgacgcctattcagcagcaagcgatacctgctatccgccgcggccaagat
gtcttagccagtgcccaaaccggtacgggtaaaaccgccgctttcgcgctgccaatcctg
caaaagatggttgaaaagccaagcgaaacgctaaagtcgaatgcccgcgtattaatcctt
acgccaacccgtgagcttgcagctcaagtggctgacaacgtcacggcttactgcaaatac
ttaaacttcagtgtcttaaccatttacggcggcgtaaagattgagactcaagcgcaaaag
ctgaaacgcggcgccgatgtgattgttgccaccccaggtcgcttacttgagcaccttacc
gcctgtaacttaagcctgtcgaacgtcgactttttagtgctagacgaagccgatcgcatg
ctcgacatgggctttagcgccgatatccaaaaaatccttcaagcggtaaataagaaacgt
caaaacttgttattctcggccactttctcaagtgcggtgaaaaaactcgccaacgacatg
atggttaaaccgcaagtgatcagcgttgataaacaaaacactacagccgacaccgttagc
caagtggtttatccggttgaacaacgccgtaaacgcgaactgctttctgagcttatcggc
aagaaaaactggcaacaggtattggtatttactgcgacccgtgaagccgccgatacgcta
gtcaaagaattaaacttagatggtatcccatctgaagtggtccacggtgaaaaaggccaa
ggcagtcgtcgccgcgccctgcgtgagtttgtggcgggtgatgtgcgcgtactggttgcc
accgaagttgccgcccgtggtctagacatcccaagccttgaatacgtagtcaactatgac
ttacctttcctcgcagaagattatgtacaccgtatcggtcgtacaggccgtgcaggaaaa
acaggcgtagccatttcatttgtgagccgcgaagaagagcgcacgttagccgatatcgaa
aaattgattggccaacagattcgccgcgtcactgtgccaggttatgaagttggcagccgc
gaattgctattaaagcaattgcaaacccgccgcagttttgccaaaaagcaacaaagaacc
gacaacgtcggcgctcaagttgctgctgagaaaaacatgcagggccgccgcgtaaaaatg
aaggtgggtcaagcaccgagcaaggcaaaaaaacttaagtaa
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