Shewanella sp. WE21: CKQ84_16305
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Entry
CKQ84_16305 CDS
T05404
Name
(GenBank) alcohol dehydrogenase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CKQ84_16305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shew03000
]
CKQ84_16305
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_16305
Enzymes [BR:
shew01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
CKQ84_16305
Transcription factors [BR:
shew03000
]
Prokaryotic type
Helix-turn-helix
AraC family
CKQ84_16305
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CKQ84_16305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
HHH
DUF6233
Motif
Other DBs
NCBI-ProteinID:
AVI67310
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Position
3666576..3668267
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AA seq
563 aa
AA seq
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MSADRVSESAIKRDEIDSVHSLESYSGQLSASICREARMSRDPRFDGKFFVGVLTTGIYC
RTVCPAVAPKEQNVRYFDSAIKAAQAGLRPCLRCRPDSAPGSNPWKGTGTTLARAISLIE
AGALAGKSSGEPASTVTQLADRLGISSRYLNKLFTEGFGTSPKQYALYRQLLFAKQLLHQ
TQLPITQVAMAAGFNSIRRFNEAFKQTLQLTPTQLRKSALTKAVKESMIEPLTGLSEIDT
MGEFVPHYGLTLYQYYRPPLDWASQLAFYRLRAVTGMEWFTPQMSHPQASDVVGDEATVV
DEAKTGDNGFEYGRCFALGKMRGTVHIIHEPKLNRFKLAIMLTEDSPVDELQLLVTEVRR
ILDLDADMQQIEQGLSALPSLGLTPFSGLRIPGAGSLFEAACRAILGQQVTVVQATKLLN
QLVEAYGERFSLNGCEYRLFPTPEAIREASLTELKMPGARKLALNALAAFICDHPEASVD
DWLSVKGIGPWTIAYAKLRGLGDPNVFLDTDLIVKKHLLALYGKIHRLDEAAAGAVNYPK
LCQQLSQEIAPWGSYLTFQLWHQ
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagatagagtgtctgagagtgcgattaagcgtgatgaaatagattcggtgcat
tcgctggagtcctattcggggcaactttctgcgtccatttgccgtgaggcgaggatgagc
cgcgatccgcggtttgatggtaagttttttgtgggcgtcttaacgacgggcatttattgc
cgaactgtgtgtcccgccgtcgcgccaaaagagcaaaatgtgcgttattttgattcggcc
attaaagccgcgcaggcgggattacgcccatgtttacgttgtcggcccgacagtgcgccg
ggatcgaatccttggaaggggactggcacaacgttagcgagggccattagcttaatcgaa
gcgggcgccttagcgggaaaatcatcgggagagccagcctcgacagtaacacaattggct
gaccgattagggatcagcagtcgttatctcaataagctctttaccgaaggttttggcact
tcgccaaaacaatatgccttatatcggcagttactgtttgctaaacaattattgcaccaa
acccaattacctatcactcaagtcgcgatggcggcgggttttaacagtattcgccgtttc
aatgaggcgtttaagcaaaccttgcaattgacgccgacgcagttaagaaagagtgcatta
accaaagcggtaaaggagtccatgattgagccactaacaggattaagtgagattgatact
atgggtgaatttgtgccgcactatggattaaccttgtatcagtattatcggccaccattg
gattgggcgtcacagctggcgttttatcgattacgtgcggtaacagggatggaatggttc
acaccgcagatgagtcatccacaagcgagcgatgtcgttggtgatgaggcgaccgtggta
gatgaggccaaaactggcgataatgggttcgaatatggtcgttgttttgccctaggtaag
atgcgcggcacagtgcacattatccatgagcctaagctaaatcgcttcaaactcgcgata
atgttgaccgaagactctcctgtcgatgagctgcaattgctggtcactgaagtgcgacgc
attttagatctcgatgcggatatgcaacagattgaacaaggtttaagtgcgctaccaagt
ttaggattaacaccgttttcgggattacgcattcccggtgcaggctccttatttgaggcg
gcctgccgcgcgattttaggccagcaagtgacggtagtgcaggcgactaagctactgaat
caattggttgaagcctatggtgagcgctttagtctcaatggttgcgagtatcgtttattc
ccgacacccgaggctattcgtgaggcgagtttaactgagctaaaaatgcccggcgctcgt
aaattagccctcaatgcgctcgcggcgtttatctgtgatcatcctgaggcgagtgtcgat
gattggctcagcgttaagggcataggtccttggacaatcgcgtatgctaagctccgcggt
ttgggcgatcccaatgtgtttttggataccgatttgattgttaaaaagcatttgcttgct
ttgtatggcaagatccataggctggatgaagctgctgcgggtgcagtcaactacccgaag
ctgtgtcagcaactgagtcaagaaatcgcgccttggggcagttatttaacctttcagctt
tggcatcaataa
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