Shewanella sp. WE21: CKQ84_17460
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Entry
CKQ84_17460 CDS
T05404
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03030
DNA replication
shew03430
Mismatch repair
shew03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKQ84_17460
03430 Mismatch repair
CKQ84_17460
03440 Homologous recombination
CKQ84_17460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shew03032
]
CKQ84_17460
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_17460
Enzymes [BR:
shew01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CKQ84_17460
DNA replication proteins [BR:
shew03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CKQ84_17460
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CKQ84_17460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNA_pol3_tau_5
DNAX_ATPase_lid
AAA
AAA_22
RuvB_N
AAA_5
AAA_16
AAA_14
PIF1
ResIII
TsaE
Adeno_E1B_55K_N
AAA_assoc_2
AAA_18
AAA_2
Motif
Other DBs
NCBI-ProteinID:
AVI67512
LinkDB
All DBs
Position
3936864..3940166
Genome browser
AA seq
1100 aa
AA seq
DB search
MSNHDMLSFKVLGAHAPAFVSHTLGSSMSYQVLARKWRPATFDQMVGQSHVLHALTNALS
QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCGSCVEIAQGRFVDLIEV
DAASRTKVDDTRELLDNVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL
LATTDPQKLPVTVLSRCLQFNLKSLTQAEIGTQLNHILTQEQFPFDAEALKLLAKAANGS
MRDALSLTDQAIAFGGGNVMLGQVQTMLGSIDEQHVVALLNALTDADIGVLMHTCAQVLA
YGADAQEVLRSLLELLHQITLTQFAPACAQQSLYSAQIRAFAEQLKPEQVQLYYQILLTG
RKDLPHAPDPKSGLEMALLRAVAFVPEKPVKRWQPYAVAEISLPEGQTPVAIAQAPDVNE
QKFAEPHTAEQLPAEKKTALIEPADTAEQALDAELQADAALIAEQAVILSQAQSQGFNAG
SLNVEIVNAEVEPQTQTVSTAQAPSQVTEAAADIEASVASLDAQNSEVPEFIGATAESSI
INPAAAEMVVGSSAVAVGSDIAEKDSAVQKTVDENTAVDSLANHTLTNSTLEQKGLDEHS
PYGTEVEHSYPAMGAYAQESAPLDSYQDAYVEFSSGSYNDDDFHHSFDSHAVPDDVQHLD
NVQNSADIQSAVGMEGSVDSHSVLIAQVSPQTSIPTLASASLADDDILSAVLAARDSLLS
DLDALSAKDGDEKKSSLDSKLKTPNTKSHGVTLPKSVTKIEASQPSVAFSVDPASDLDPD
LAIDFDDDFDLDLEPIELHQAVSSVVISTGIVSEKPAKPSATYDRPPWEAAPEAESIEVT
QVDSNKTDSVQPVSAQATDINNVQVSHAQELLGESYAPNHAQDDTLSLSDGQVAASSLKS
EILQTHVVRQEEIPASEFASVSTTALTNASNTVEHTQETQVALSSTQPISGHPLDLHWYK
LMASLEIGGRVRQLAVNSVCQTLSDPLPLLLKPNQKHLAADVAIVQLEQALTTALGNPRR
VQVVIGIDEQRETPLELRKRFHQELLQQAHQSLIHDDNVQWLIQRMGAELDADSLVYPPE
LLNLRSQQIQALPELTDAAS
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcatgacatgttatctttcaaagttctcggggcgcatgctcccgcttttgta
tcacatactctggggagttccatgtcatatcaggtgttagccagaaaatggcgccctgcc
acatttgatcaaatggttggccaaagccatgttttgcatgccttgaccaatgcgttaagc
cagcagcgcttacaccatgcttacctgtttacgggaacgcgcggtgttggtaaaaccagt
ttagcgcgactctttgccaaaggcttaaactgcgaacaaggcgtgacagcgactccctgt
ggtgtttgcggcagctgtgtggaaatcgcccaaggccgatttgtcgatttgattgaagtc
gatgccgcatctcgcactaaggtcgatgatacccgtgagctgttagacaatgtgcagtat
cgtccaacccgtggccgctttaaggtttatctcatcgacgaagtgcatatgctgtcgcgc
agcagttttaacgcactgctaaaaaccttagaagaaccccccgagcacgttaaatttctt
ctggcgacaaccgatccgcagaaactgccagtgactgtgttatcccgttgtttgcagttc
aatttaaaaagcctgacccaagctgaaattggcactcagctcaatcatattttgacccaa
gagcagtttccctttgatgcagaggccctaaaactgttggctaaagctgccaatggcagt
atgcgtgatgccttgagtttgacagatcaagccatcgcctttggtggcggtaatgtgatg
cttggccaagtgcaaaccatgcttggcagcattgatgagcagcatgtagttgccttgctt
aacgccttaactgatgccgatattggtgtgctaatgcatacctgtgcccaagtgctcgcg
tacggcgcagatgcccaagaagtgctacgcagtttacttgagttgttacatcaaattacc
ttgacccaatttgcccccgcttgcgcgcagcaatccttgtatagcgcacaaattcgcgcg
tttgccgaacagcttaagccggaacaagtgcagctttattatcagattttattaacaggc
cgcaaagacttaccccatgcaccggatcctaaatcgggtcttgagatggcgctattacgc
gctgtggcgtttgtgccggaaaagccagtaaagcgctggcagccttatgcggtcgctgag
atcagtttacccgaagggcaaacgccagttgcgatagcgcaagctcctgatgtaaatgaa
caaaagtttgctgagccacatactgcggaacaactgcctgctgaaaaaaaaacagcatta
attgagcctgccgataccgcagagcaggcacttgatgctgagctccaagcggatgcggca
ttaattgccgaacaggcggtgattctaagtcaggcgcagagtcagggatttaacgctggc
agcttaaacgttgagatagtgaatgctgaggtcgagccacaaactcaaacagtatcaacc
gctcaagcgccttctcaagttactgaagctgctgctgacattgaggcatcggttgcgagt
ttagatgctcagaatagtgaagttcctgaattcattggggcaactgccgagtcgagtatt
attaatccagcagcggctgaaatggttgttggttcaagcgctgtggctgttggtagtgac
attgcagagaaagacagtgctgttcaaaagactgttgatgaaaacactgctgttgactcc
ctcgctaaccatactcttactaatagtacgctagagcaaaaggggcttgatgaacatagt
ccctatggaactgaagtcgagcattcttatccagcgatgggagcttatgcccaagagtca
gcgccgctcgattcctatcaagatgcttatgttgaattctcctccggctcttacaatgac
gatgattttcatcacagctttgactctcatgctgtgcctgatgatgttcaacacttagat
aatgttcaaaattctgctgatattcaaagcgctgtaggcatggaaggctcagttgatagt
cactcagtattaattgctcaagtgtctcctcagacatcaattccaacactagcctccgca
tccttagccgacgacgatattctttcagctgtgttggcagcgcgggattcgctgttatcg
gatcttgatgctttaagtgctaaggacggtgatgaaaaaaagtcgtcattggactcaaaa
cttaagacgccaaacactaaatcacatggtgtaaccttacctaaatcggttactaaaatt
gaagcgagtcagccaagtgtggcattttctgttgatccagcatctgatttagaccctgat
ttagcgatagattttgatgatgacttcgacttagatcttgagcctatcgagctgcaccaa
gcagtatcttcagtcgtcatctcaactggaattgtctctgagaagcctgccaaaccgtct
gctacatatgatcgtccgccttgggaggcagcgcctgaagctgaatctatcgaagtgacg
caagtcgatagcaataagactgacagtgttcagcctgtgagcgcgcaagctactgatata
aataatgttcaagttagtcatgctcaagagcttttaggcgagagttacgcacctaatcat
gcacaagatgacactctatccctgagtgacgggcaggtcgcagcatcaagtttgaagtcg
gagatacttcaaactcacgttgtacgtcaagaagaaatacccgcctcagagtttgcttcg
gttagcacaacagcactgacaaatgcgtcgaatacagtggagcacacgcaggagacacaa
gtcgcgctcagttcgactcaacctattagcggtcatccattagatttacattggtacaag
ttgatggcgagcttagagatcggcgggcgagtgcggcaactggcggttaattctgtctgt
caaactttgagcgatcctttgccgttgctgcttaaaccaaaccagaagcatctagcggcc
gatgttgctatagtgcagcttgagcaagccttaactaccgcgctcgggaacccaagacgg
gtacaagtggtcataggaatcgatgaacagcgggaaacgcccttagagttacgtaagcgt
ttccaccaagagttgctgcaacaagcgcatcaatcattgattcatgatgacaatgtgcaa
tggttgatccaacgtatgggcgccgaactcgatgccgatagtctagtatatccgccagag
ttgttgaatttacgcagtcagcaaatacaagcgttacctgagttaactgatgccgcgagt
tag
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