Shewanella sp. WE21: CKQ84_18070
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Entry
CKQ84_18070 CDS
T05404
Name
(GenBank) long-chain-fatty-acid--CoA ligase FadD
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
shew
Shewanella sp. WE21
Pathway
shew00061
Fatty acid biosynthesis
shew00071
Fatty acid degradation
shew01100
Metabolic pathways
shew01212
Fatty acid metabolism
shew02024
Quorum sensing
shew04146
Peroxisome
Module
shew_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
CKQ84_18070
00071 Fatty acid degradation
CKQ84_18070
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
CKQ84_18070
09145 Cellular community - prokaryotes
02024 Quorum sensing
CKQ84_18070
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
shew01004
]
CKQ84_18070
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shew04147
]
CKQ84_18070
Enzymes [BR:
shew01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
CKQ84_18070
Lipid biosynthesis proteins [BR:
shew01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
CKQ84_18070
Exosome [BR:
shew04147
]
Exosomal proteins
Exosomal proteins of breast milk
CKQ84_18070
Exosomal proteins of breast cancer cells
CKQ84_18070
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Pept_S41_N
Motif
Other DBs
NCBI-ProteinID:
AVI67612
LinkDB
All DBs
Position
4043543..4045216
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AA seq
557 aa
AA seq
DB search
MDQPWINHLPEDVPAEINVEQYSSLVDMFETAVAKYEDQPAFINMGATLTYRKLEERSRA
FAAYLQNELKLEKGDRVALMMPNLLQYPIALFGVLRAGMVVVNVNPLYTPRELKHQLIDS
GAKAIVVVSNFARTLEEVVEQTPVESVIITSLGDQLSAPKRTLVNFVVKYIKKLVPKYDL
PHALSMRDTLSTGRRMQYIKPEVTNDDLAFLQYTGGTTGVSKGAMLTHGNIVANVLQADG
AYSPALNDGSEFVVTALPLYHIFALTVNCLLFLHKGSQNLLITNPRDIPGFVAELKKYPF
TALTGVNTLFNALVNSDDFSQLDFSRLKLSIGGGMAVQKAVADKWQTITKTRLLEGYGLT
EASPLLTCCPYNLDGYNGSIGFPAPSTLIQIRNDDGKVLAQGETGELFGKGPQVMKGYWQ
RPEETAKVIDTDGWLATGDIGYMDEKGFFYIVDRKKDMILVSGFNVFPNEVEEVVALHPK
VIEVAAVGVPNDASGELVKVFVVAKDKSLTAEDIIKHCRIHLTGYKVPKLVEFRDELPKT
NVGKILRRELRDEAKRA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggatcagccttggattaatcatttgccagaagatgtgcctgctgaaattaatgtggaa
caatactcatcgcttgtcgacatgttcgagacagcggtggctaagtatgaagatcaacct
gcatttatcaacatgggtgccacgctaacctatcgtaaattggaagaacgcagccgagca
ttcgctgcgtatttacaaaatgaattaaagcttgaaaagggcgaccgtgtcgccttgatg
atgccaaacctgttgcagtatcccattgcactgtttggtgttttgcgtgcaggtatggtg
gttgttaacgttaacccactttatacaccgcgcgaacttaaacatcagttgattgactct
ggcgccaaagccattgtggtggtgtcaaacttcgcccgcactttagaagaagttgtcgaa
caaactcccgttgaaagcgtgattatcaccagtttaggtgatcaattaagtgcaccaaaa
cgtaccttagtgaactttgtggtgaagtacatcaagaagttagtgccaaaatacgattta
ccccatgccttatcaatgcgcgataccttatcaacgggtcgtcgcatgcaatacatcaaa
cctgaagtcactaatgatgatttagcgtttttacaatacacaggtggcaccactggggtc
tctaaaggcgctatgttgacccatggcaatattgtcgcaaacgtattgcaggccgatggt
gcatattctcccgctttaaacgatggcagtgagtttgtcgtaacggccttgcctctgtat
cacatcttcgccttgaccgtgaattgcctgctgtttttgcacaaaggtagtcagaattta
ctcatcaccaatcctcgcgatatcccaggatttgtggctgagttgaaaaagtatcctttc
accgcattaactggggtaaataccttatttaacgctttagtgaacagtgatgatttttcc
cagttggatttctcacgcttaaaactctctatcggtggcggcatggcggtacaaaaagcc
gtggcggataaatggcaaaccattactaaaacccgtttacttgaaggttatggtctgacg
gaagcctcacccttattaacctgttgtccatataacttagacggttataacggttcaatt
ggttttcctgcaccttcgacactgatccaaattcgtaatgatgacggcaaggtattagcc
caaggcgaaaccggtgaactgttcggtaaaggtcctcaggtgatgaaaggctattggcaa
cgccctgaagaaaccgccaaagtgatcgacactgacggttggttagctacgggcgatatt
ggttatatggatgagaaaggtttcttctatattgtcgaccgtaagaaggatatgatctta
gtctcaggttttaacgtattccctaacgaagtagaggaagtggtcgcacttcatccaaaa
gtgattgaagtggctgctgttggtgtgccaaacgacgccagtggcgagttagtgaaggta
tttgtggtggcaaaagataaatctttaaccgctgaagacatcattaagcactgccgtatt
catttaacgggatataaagtgccgaagctggtagaatttagggacgagttacctaaaacc
aacgtgggtaaaatcttgcgacgagagcttagagacgaagctaagcgcgcgtaa
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