Shewanella sp. WE21: CKQ84_19325
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Entry
CKQ84_19325 CDS
T05404
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CKQ84_19325 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_19325 (recB)
Enzymes [BR:
shew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CKQ84_19325 (recB)
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CKQ84_19325 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AVI67810
LinkDB
All DBs
Position
complement(4334292..4338089)
Genome browser
AA seq
1265 aa
AA seq
DB search
MSEQMPLNTQALHSAPQALDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGIPAP
LTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLTIADPFVQALYDNTPESERAIAL
RRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSEFLHHAVRDFWREA
CYPLPDYLAQIIAKEFGEPDGLVKQLRPLLGASQAKPLKPGLKFDVLALSLRQSLERFKL
AWPRGRDGLLALLHSLPLNGTRFGKATDKYPKLAAMFDALDNWLAFGHGLPPLKELEALS
LSELKLNKGGVIPSVSEAPLMDHMEQLATLIAAIKPAFLYSAKLGISERFAQQKQQKNVL
TPDDLLTTLASALNANNETLPKAVATRFPVALIDEFQDTDPLQFAIFSGIYQDRYSFEQQ
GKNDTENKLSLLMIGDPKQAIYAFRGADIHTYIEARHHTQAHYHLDTNYRSSANMVAGVN
HLFSQHHDPFISQSIPFDSVKTPSSAKGKILTEKTANPAALRLRLLSESAENGLNKTTAR
HLLAEDAAAQITRLLTDAANGECHSPKGPLIAKDIAILVRDRNEAAVMKTALSKRHIGAV
FLSRDSVFDTLEAREMALILRSLANPKDERALRSALATALLGYSAEQIHAFNQDEEHRQQ
LLEQFFNLHQVWQKRGIMPALLSLANSTKLIDRLLHTASTQTDAQEQDATNGERRLTDFR
HLAELLQQKATELDGMSALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGLEY
PVCFVPFVSLARDNRRRPTPMLYHRTNDAGEQELVWDIEGTDDGWERTKQETLAEDLRLL
YVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGIGDSECDFARICNAVQQLAQ
DVEAISIDKLPDDIDERPLPSSQDIAQILSAKTLTRQYCTPWRVGSYSGLVKNTSHGKAA
PGADDEILGTLEYTAAQTLSIPDEASHDLQDDMLNRFNFERGANAGSFMHLVLEEIDFTQ
AEIDLPLQLPKAMLQYGIAPEWQTVLHTWYLDVLHAPLCAIPHALESQVTSHVRAVSAVK
PAHPDLCLAQLSPQNTLVEMEFYLPLSELKDTELNALLQQFGYESTLKFDDLKGMLKGFI
DLTFEYQGQYYIADYKSNHLGDNINAYHQSALQSAITDHRYDLQYILYSLALHRYLSLRL
PSYDYDSHIGGCYYLFLRGMSAQYPGYGIYYDKPPKALILALDSLFNDNLFHSRLARAID
TGVTA
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacagatgccgttgaacacgcaagccttacattcagcaccacaagcgcttgat
cctctcactctgccctttggcggtagtcgtcttattgaggccagcgcaggcacaggtaaa
acctacacgatttcaggtctttatttacgcttattgcttggggatggcattcctgcgccg
ctcacctgcgaacaaattctcgtggttaccttcaccaatgcggccaccgaagagttaagg
gatcgtattcgccggcgtattcaagttgcctttaagtgtttcttaggactaacgattgcc
gatccctttgtgcaggcgttgtatgacaacaccccagaaagtgaacgcgccattgccttg
agacggttcgatctcgcccttaaatccctcgatgaagcagcaatttttaccattcacggt
ttctgtcagcgaattttatcggatctcgcctttgagtcttccttgctgttcgaatcggac
tttaccttggacgacagcgaatttttgcaccatgccgtgcgggatttttggcgtgaggcc
tgttatccgctgcccgattacttagcgcaaatcattgccaaggaatttggcgagcccgat
ggtttagtcaaacagttgcgaccgctccttggcgccagtcaagcaaagcctttgaaaccc
gggcttaagtttgatgtcttagccctgtcactgcgccaaagtttagaacgctttaaatta
gcttggccaaggggacgcgatggcttattggcattgctacacagtttgccgctgaatggc
acccgctttggcaaagcaacggataagtaccctaagctcgccgccatgttcgatgcacta
gataactggctcgccttcggtcatgggttaccgccgctgaaagagttagaagccttatcg
ttgtctgagttaaaactcaacaagggcggcgtgatcccaagtgtgagtgaagcgccgcta
atggatcatatggagcaactcgccacattgattgccgccattaaaccggcatttttatat
agtgcgaaactcggcataagcgagcgatttgcccagcaaaaacaacaaaaaaatgtgctg
accccagatgacttactcacgacattagcgagcgcgttaaacgccaataatgaaaccttg
cccaaagccgtggcaacacgttttcccgtcgcgcttattgatgaattccaagataccgat
ccgctgcaatttgcgatcttctctggtatctaccaagaccgctactcgtttgagcagcaa
ggcaaaaacgatacagaaaataagctcagcctgttgatgattggcgatcctaagcaagcc
atttatgccttccgtggtgccgatatccatacctatattgaggcccgtcatcatacgcag
gcccactatcatctggataccaactaccgctcaagcgcaaacatggttgctggggttaac
catctgtttagccagcatcacgatccttttatcagtcaatcgatcccctttgatagcgtg
aaaacgcccagcagtgctaaagggaaaatcctcactgaaaaaaccgccaatccagccgct
ttaagattaagactcttaagcgaaagcgcagaaaacggcctcaacaaaaccacggcaaga
cacttgctcgccgaagacgcggcggcacaaattacccgtttactgacagatgcggccaat
ggcgaatgccacagccctaaagggcctttgatcgctaaagacatcgctatcttagtgcgg
gatcgcaacgaagcggcagtgatgaaaaccgcattaagtaaacgccacataggcgcggtg
tttttaagtcgcgacagtgtgttcgatacccttgaagcgcgggaaatggcgttaattttg
cgatctctagcgaacccaaaagatgaacgggcactgcgcagcgccctagccacggcatta
ttaggttatagcgccgagcaaatccatgcctttaaccaagatgaagagcacagacagcag
ttattagagcaattttttaacttgcaccaagtgtggcaaaaacgcggcatcatgcccgcg
ctactcagccttgccaatagcactaagctgattgaccgtttactgcacaccgccagtacg
caaaccgatgcacaggagcaagatgccacgaatggcgagcgccgtttgacggattttcgc
caccttgccgagctattacaacaaaaggccaccgaacttgatggtatgagtgccctactc
aattggtatgaacagcaactgattgataacacaggcaccgatgaacagcagctacgcctt
gagagcgagcagaatctagtacagatcgtcactatccataagagtaagggtcttgagtat
cccgtgtgttttgtgccctttgtcagcctagcccgcgacaatcgccgccgccctacgcct
atgctgtaccacagaactaacgatgcaggtgagcaagagctagtatgggatatcgaaggc
acggatgacggttgggagcgcacaaaacaagaaaccttagccgaagacttgcgccttttg
tatgtggcgctcactcgccctgtgtatttgtgttacttgtatatcgccaaccacagtcgt
cagcttaaaaatggccttaaaagtcagctgcatgaaaccgctatcggctatctgctcggc
ataggcgactcagaatgtgactttgcccgtatctgcaatgctgtgcagcagctcgctcaa
gatgtggaagccataagtattgataagctgcccgatgacatagacgagcgcccattgccc
tcaagccaagacatagcgcaaatacttagcgcgaaaaccttaacccgccaatactgcacg
ccgtggcgagtcggcagttattcaggcctagttaaaaataccagccatggtaaagccgct
ccgggtgccgacgatgaaatattaggtacgcttgaatatacggctgcgcaaacactctct
attcctgatgaggcaagtcatgatctgcaggatgacatgctcaatcgctttaactttgag
cgcggcgccaatgccggtagctttatgcatttagtgttagaagagattgattttacgcag
gccgaaatcgacttaccgctgcaattgcctaaagccatgctgcaatacggtatcgcgccc
gaatggcaaacagtattacatacttggtatttggatgtgctgcatgcaccgctctgcgcg
ataccgcacgccttagagtcgcaggtcactagccatgtaagagccgtaagcgccgtcaaa
cctgctcatcctgatttgtgcttagcccagttatcgccgcagaataccttagtcgaaatg
gagttttatttacccttaagcgaacttaaagatactgagctcaatgcactactgcagcag
tttggctatgagtcgacacttaagtttgatgatctcaagggcatgctcaaaggctttatt
gatttaacctttgaataccaaggtcaatattatatcgccgactataagtcgaatcattta
ggcgacaacatcaatgcctatcatcagagcgcgctgcaaagcgcaataaccgatcatagg
tacgatttgcagtacattctctattcattggcgctacacaggtatttgagtttacgcctg
ccaagttatgactacgatagccacataggcggttgttattacttgttcttacggggaatg
tcagctcaatatcccggctatggtatttactacgacaagccgccgaaggcacttattctc
gcgctagattcactttttaatgacaatttatttcacagcagattggctcgtgcaatagat
acaggagtcacggcatga
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