Shewanella sp. WE21: CKQ84_19330
Help
Entry
CKQ84_19330 CDS
T05404
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CKQ84_19330 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_19330 (recC)
Enzymes [BR:
shew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CKQ84_19330 (recC)
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CKQ84_19330 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AVI67811
LinkDB
All DBs
Position
complement(4338086..4341904)
Genome browser
AA seq
1272 aa
AA seq
DB search
MLKLIQSNQMEVLCAHLAAYLTQPLAFARLLSNEHILVQSPGMSTWLRLEIAKQNGIAAA
LEFPLPSSFTWQLCHDLLPNVPKDNAFTKAAMTWKLMQLLPRMLQNDAFGPLRHYLGHVQ
SNSLDNMLDSMSTTNAADTSEHLNASNLTADDIKLYQLCGRIADIFDQYLVYRPDWILAW
EQNEQPDSLTKPLNEDQRWQPILWRALIAFNRDELNQSHYHRANLHSDLIAALNHPDTSL
AKLPQRLFVFGISSMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQY
AGKRQLAELWEDKLEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNSP
HSNASMLHGVQYDILEMQTLDRVLGPDAELYQNVENRRLLKRDDESIRVKSCHSPLREIE
TLHDHLLELLSNDIDLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQE
SPLINSFLNLLGINQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRD
EQSRLKQGVPAFEQNSWAFGIKRLILGYALSDDAPLYQDHLVVTGIEGQSAQALGKLLNF
IEVLDETAQILALPQVGALRLAELTELLDAFYDTDEDEREQLQEIRDAIAALEQELLSAG
RPLDTKTLETNPLEALTQERISGLSLSIEVLQQWFNQRLTKSRVGQRYLAGSVNFCTLMP
MRSIPFKVVCLLGMNDGVYPRVQHPVGFDLMAHFGARKGDRSRRLDDRYLFLEALLSARE
QLYISYIGRSERDNSERIASMLVSELIEYCQLCYLPEALLIQSQNAASVIEPEDAEKTLY
NAIVSHQPLQPFDPKLYQATVKRDDKDGSGRTPSNSGIGQSYSLQWCPPNTDTVGTHAGR
FIGVQTRIMLEADEQDSVPDTEAQPASEHEQQQSKKVDVSALIRFFRNPAQYFFNRTLKV
DLSLNIQADDNDEPFSLNALERYMLQAKLLDDAIGQGLTEPDIELIKRLKASGTLPMQPF
DDLLLRQYQHDIKPLIGRTLFLKGEQASSHADIKLVFDLPITADKSQQVLLQGRIDDISP
KGLVNYRPGSAHGRDVLRLYLRHLCLMAMGHTHASYLLDMGHFHALAPITAERAHALLAD
LLVLFYQGQQHPLCFMPRTSLAYVSCEGEHDERLQQALPEWLDEQSQLGEGNEPHYQRLF
SFPRDFSEDSFGALAERIYRPMVSLYLKDTLAQLEEFALNDGMSQGPANEHATDTQALAP
HLNRNSAQGEQA
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagttaatccagtccaatcagatggaagtgctctgcgcccatttagccgcttac
ctgacccaaccccttgcttttgcacgtctactgagtaacgagcatattctggtacagagt
cccggcatgtcgacttggctacgcctcgaaatcgccaaacagaatggaattgctgccgca
ctggaattcccgctgccatcgagctttacctggcagttgtgccatgacttattgcccaat
gtgcctaaggataacgccttcactaaggcggcaatgacgtggaagctgatgcaactctta
ccgcgcatgctacaaaatgacgcctttgggccgttgagacactatctaggccatgtgcaa
agtaatagcctagacaatatgctagacagcatgtccaccacaaatgccgccgacacgagt
gaacatctcaacgccagtaacctgacggctgatgatattaagctgtaccaactctgtggc
cgcatcgccgatatcttcgaccaatacttagtgtatcgccccgattggattttagcgtgg
gagcaaaacgagcagcccgactcactcaccaagccgctgaatgaagaccaacgctggcaa
cctattttatggcgcgcgctcattgcctttaaccgtgatgagcttaatcaaagccattac
cacagggccaacctgcacagtgacttaattgccgcgctgaatcatcccgacacgtcactc
gccaaattaccgcaacgcctatttgtgtttggcatttcctcgatggcgccgcaaaccctt
gaagtgctttaccatctggcaggccgtatcgatgtgatcgtgcttggcttaagcccgtgt
cagcactattggggcgacattgttgatccccgtaatcgtgcccgcatggcggtgcaatat
gcgggtaaacgccaattagccgaactatgggaagataaactcgaagtgggcaatccgctg
cttgccaataacggcaagatgggccgtgaattactcgatatgctgcttgagctccccgcc
gaacactgcgactttggcgatgatgtgtattgtgagccctgtgacgatcccaactcgcca
cacagtaacgccagcatgctccacggcgtgcaatacgatattttagagatgcaaacctta
gacagagtgctagggccagatgccgagctgtaccaaaatgtcgagaacagacgcctacta
aagcgcgacgatgaatctattcgagtcaagagttgtcacagcccactgcgggaaatcgaa
accctgcacgatcacttgcttgagttactcagcaatgatatcgacctgacgcctaaagac
atagtggtcatgatgcccgatgtcgccgcctacgcgccctacatcgatgcagtcttctcg
gcgaagcaaggcctgcattacattccctacgccattgccgaccgcggcgcagcgcaggaa
tcaccgctcatcaatagctttttaaatttactcgggattaatcagagtcgttttggtctg
accgacattttgagcatactcgaagtgcccgccattttgcgccgtttccagctcgatgac
gatgaattgcaactgatccgccgctggttagatgaagcgggcgtgcgctggggccgcgat
gaacaaagccgccttaaacaaggtgtgccagcgtttgagcaaaactcttgggcctttggt
attaaaaggctgattttaggttacgccttgagtgacgatgcgccgctctatcaagaccat
cttgtcgtcactggcatcgaaggccaatcggcgcaggcgttaggtaagctactcaatttt
attgaagtactcgatgaaacggcgcaaatactcgccctgccgcaagtgggcgccctgcgt
ttagcggaattaactgagctactagatgccttctacgacacagatgaagacgaacgcgaa
caattacaggaaatccgcgatgccattgccgccctagagcaagagttactatcggcgggc
aggcccttagatacaaaaacgttagagacaaatccgctagaggcgctaacccaagagcgc
ataagcgggcttagcctcagtattgaagtgctgcaacagtggtttaatcaacgcttaacc
aaatctcgggtcggccagcgttatcttgcgggaagcgtgaacttttgcaccttgatgccg
atgcgctcgattccttttaaggtcgtgtgtttactcggcatgaacgatggggtttatcct
agggttcaacatcccgtcggctttgatttaatggcgcatttcggtgcccgtaaaggcgat
cgctcccgccgcctcgatgacagatatttgtttttagaagccttattgtcggcgcgggaa
caactgtatatcagctatattggccgcagcgaacgggataactctgagcgtatcgcctct
atgcttgtctctgagctgattgaatattgtcagctgtgctatttacctgaagccctattg
attcaatcgcaaaacgctgcaagcgtaattgaaccagaggatgccgaaaaaaccctctat
aacgcgattgtcagccaccagccactgcaaccctttgatcccaagttgtatcaagccaca
gtaaaacgtgatgacaaagatggctcaggcagaaccccaagtaactcgggcataggccaa
agttacagcctgcaatggtgtccacccaatacggacactgtgggcacacatgcgggccgc
tttatcggcgtgcaaactcgcatcatgctcgaagcggatgaacaagactcagtgccagat
acagaggcacagcccgcttctgagcacgaacaacaacaaagtaagaaagtggatgtgtca
gccctgatccgtttctttcgaaatccagcgcagtacttcttcaaccgtacattaaaagtc
gatctcagccttaatattcaggccgatgataatgacgagccctttagcttgaatgcccta
gagcgctatatgttacaggccaagttactcgatgatgccataggccaaggcctaactgag
cccgatatcgagctgattaaacgcctcaaagccagtggcactttgcccatgcagcccttc
gatgatttgctactgcgccaatatcagcatgatattaaacctttgattggcagaaccttg
ttcctcaagggagaacaagccagcagccatgcggatattaaactcgtgtttgacttgccc
atcacggcggataaatcccagcaagtgttactgcaaggccgtatcgatgatattagccct
aaggggttagtgaattaccgtcctggtagcgcccacggtcgcgatgtgctgaggttgtac
cttcgccacctgtgtttaatggcaatgggccacacacatgcaagctatctactcgacatg
gggcacttccacgccttggctccaatcactgctgagcgcgcccatgcgttactggccgat
ttgttggtgttgttttaccaaggccaacaacacccactgtgttttatgccgcgcacgtca
ctggcctacgtcagctgcgagggtgagcacgatgagcgtttgcagcaagcgttacccgaa
tggttagatgagcagagtcaattgggtgaagggaacgaaccccattaccagcgattattt
agtttcccgcgggatttctctgaggatagctttggcgcattagccgagcgtatctatcgc
cctatggtgagtttatatctcaaagacacactggctcagcttgaggaatttgcgcttaac
gatggcatgagccaaggccctgctaatgaacacgcgactgacacacaagctctcgcacca
catttgaaccgcaatagtgcacagggagagcaagcatga
DBGET
integrated database retrieval system
