Shewanella sp. WE21: CKQ84_20210
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Entry
CKQ84_20210 CDS
T05404
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKQ84_20210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shew03019
]
CKQ84_20210
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_20210
Enzymes [BR:
shew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKQ84_20210
Messenger RNA biogenesis [BR:
shew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKQ84_20210
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CKQ84_20210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SWI2_SNF2
TniB
Cas3-like_C_2
AAA_22
IF2_N
Motif
Other DBs
NCBI-ProteinID:
AVI67961
LinkDB
All DBs
Position
complement(4523445..4525433)
Genome browser
AA seq
662 aa
AA seq
DB search
MFNPIPETNPYVSLLQQDFGFSEFRPGQAQTITQLLAGKSSLAIFPTGSGKSLCYQFTAL
QLPHLSLVISPLLALMKDQLEFLQSKGIHAASIDSTLSAEQSQQVMTDARSGKLKVLMVS
VERFKNERFRQFIQSVPLSMLVVDEAHCISEWGHNFRPDYLKLPDYRRELEIPLVLLLTA
TATRKVKLDMAKRFDIAPEHIVQTGFYRPNLDLTVLPVSTQEKNALLVNQITSFSGAGIV
YVTLQQTAETVARLLCQQGIVASAYHAGFEDEKRQQIQNDFMQDKLQVVVATIAFGMGID
KSNIRFVIHYDLPKSIENYSQEIGRAGRDGALSHCVTLANLDGLNTVENFVYGDTPEREG
IAQVIEAIRLEQDSGQWECQLNGVSMVSNIRQLPLKTLLVQLEILGVVKPLFAYYADVNY
KFLVDKHVILSRFNPERQAFLTQIFNHTQMKKIWGALDFDALYSATGHERSRVLAALEYL
AEHQLIELETKRITDVYRVDVAALARPELIDELYHYFIDKEQKEIARIAQLVRFFELETC
LSHNLSLYFDDNKTPAICGHCSVCRGYFAKLSYSTEPTWPTDQQILADLHELKHHLTAKG
IDALSLDTYCRCLAGMSVPLVSRFQVRKLSGFGRCEKLRYAEIKQKVESLLSQLDDKRVE
HE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatcccattccggaaaccaatccatacgttagtttattgcagcaggatttcggg
ttttctgaatttcgccctggtcaagcgcaaacgataacacaactgttagcagggaagtcg
agtttagcgattttcccgacaggttctggtaaatccctttgttatcaatttacagcattg
cagttaccccatttgagtttagtgatttcgcctttactcgccttgatgaaagatcagctg
gaatttttgcaatctaagggaattcatgcggccagcatagattcaaccttaagcgctgag
cagagtcagcaagtgatgacagatgcacgctctggcaaactgaaagttttaatggtgtcg
gtggagcgtttcaaaaatgaacgctttaggcagtttattcaatcggttccgctgtctatg
ttggtcgtcgatgaggcgcattgtatttcagaatggggtcacaattttcggcccgattat
cttaaattacccgattatcggcgcgagcttgagatcccgctggtactgttactgacggcc
actgcgacacgtaaagtgaaactggatatggccaagcgcttcgatatcgcgcccgaacac
atagtacaaacgggattttatcgacccaatttagatttgactgttctgcccgtgtcgacg
caagagaaaaatgccttactggttaaccagataacatcattctcaggtgctggtattgtg
tatgtgacgttacagcaaaccgccgaaacagtcgcacgactcttgtgccaacaaggcata
gtcgccagtgcttatcatgctggatttgaagatgaaaaacgtcaacaaattcaaaatgat
tttatgcaggataagctgcaagtggtggtagctaccatcgcttttggtatgggaatcgat
aagagcaatatccgttttgtgatccactatgatttgcctaaatccattgaaaactacagt
caagaaatcggcagagcagggcgtgatggtgccttatcccattgtgtgactttagccaat
cttgacggactcaataccgttgaaaattttgtgtatggcgatacgcctgagcgagaaggt
atagcgcaagtcattgaagcaattcgacttgaacaagattctggtcagtgggaatgtcag
cttaatggcgtgtcgatggtgagtaatattcgccagttgccattaaaaacgttacttgta
cagctagagattctaggtgtggttaagccgttatttgcttattacgccgatgttaattac
aaatttttagtggataaacatgtcattctgagccgctttaatccagagcggcaggccttt
ttgacgcaaatttttaatcatacgcagatgaagaaaatatggggcgcgttagattttgat
gccttgtacagtgcgacgggccatgaacgcagtcgtgtattggccgcgctggaatattta
gctgaacatcagttgattgaattagaaaccaaacgaattaccgatgtgtatcgggtggat
gttgccgcattagcgcgtccggaactcatcgatgagctgtaccattattttattgataaa
gagcagaaagaaattgcgcgaatagcgcagttagtccgcttttttgaacttgagacgtgc
ttaagccacaatttatccctttattttgatgataataagacgccggctatctgcggtcat
tgcagtgtctgccgcggttatttcgctaagttgagttattcaacggaacctacttggccg
acagatcagcagatattggctgatttacatgaattgaagcaccatttaacggccaaaggc
atagatgctttatcacttgatacctattgtcgttgcctcgctggtatgtcagttcctttg
gtgagtcgttttcaagtgcgtaagttgagtggtttcggccgctgtgaaaaattgagatat
gctgaaattaaacagaaagttgagtcactgttgtcgcaactagatgataaaagagttgaa
catgaataa
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