Shewanella sp. WE21: CKQ84_21145
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Entry
CKQ84_21145 CDS
T05404
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
shew
Shewanella sp. WE21
Pathway
shew03030
DNA replication
shew03430
Mismatch repair
shew03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKQ84_21145 (holB)
03430 Mismatch repair
CKQ84_21145 (holB)
03440 Homologous recombination
CKQ84_21145 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shew03032
]
CKQ84_21145 (holB)
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_21145 (holB)
Enzymes [BR:
shew01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CKQ84_21145 (holB)
DNA replication proteins [BR:
shew03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CKQ84_21145 (holB)
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CKQ84_21145 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
SFTA2
SecM
Motif
Other DBs
NCBI-ProteinID:
AVI68137
LinkDB
All DBs
Position
complement(4748865..4749821)
Genome browser
AA seq
318 aa
AA seq
DB search
MVAESGFTAEQLPWLEGPRQAFLAQLACQKIPHAQLVGIDSAYGGELLSVFMARAAMCLQ
PTPVGACGFCKSCQLYDAGNHPDFYHIAADGNQIKVDQIRELCTRLTATAQQSGRRVAII
HHSERLNSAAANALLKTLEEPGKDTLLILQSDTPARLMATVSSRCQRIPFVVPSREVIKN
WLAQRCGIQEDVTWCLSVVGGPLKLAESLQSEGSQQSRYQSLLQFRKDWAQSLSSGHLCA
SLLIISEQQIIDVLKVLYLLIRQVLLKNSHQDAFVHAQLGNLAAKIMGMCHSLSTMPSVN
YLALCQSYVLEYREITNK
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggtagccgagtccggatttacggctgagcaattaccttggctcgaagggccaagacag
gcatttttagcgcaattagcgtgtcaaaaaatacctcacgcacaactcgtgggcattgat
tcagcctatggcggtgagttgctgagtgtgtttatggcacgcgcggctatgtgtttgcag
ccaacgcctgtgggagcgtgcggtttttgcaagtcttgtcagctctatgatgcgggcaat
catcctgatttttatcatatcgccgccgatggcaatcaaattaaagtcgatcaaattcgt
gagctgtgtacgcgtctgacagccaccgcacagcaaagtggcaggcgtgtagcgattatc
caccacagcgagcgtcttaactccgctgccgcgaacgcactccttaaaacccttgaggag
ccaggtaaggacaccttactgattttgcagtcggatacgccagcacgtttgatggcgacg
gttagcagtcgttgtcaacgcattccttttgtcgttcctagtcgagaggtcatcaaaaac
tggcttgcccagcgatgtggtattcaagaggatgtaacttggtgtttgagtgtggtgggt
gggccgttaaagttggctgagagcttgcagtctgagggtagccaacagagtcggtatcaa
tccttgctacaatttcgcaaagattgggcacaaagtttgtcgtctggtcatctgtgtgct
agtttgttaataataagtgaacaacaaataattgatgttcttaaggttttgtacctactt
atacgacaggttttactgaaaaatagccatcaagatgcgtttgttcatgcgcagctcggg
aatttggcggctaagatcatgggaatgtgtcatagcttaagcacaatgccgagcgtcaat
tatctggccctgtgtcaaagttatgtcttagaatatagagagataacaaataagtaa
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