Shewanella sp. WE21: CKQ84_22360
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Entry
CKQ84_22360 CDS
T05404
Name
(GenBank) helix-turn-helix transcriptional regulator
KO
K04333
LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
Organism
shew
Shewanella sp. WE21
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shew03000
]
CKQ84_22360
Transcription factors [BR:
shew03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
CKQ84_22360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GerE
VpsT-like_REC
Sigma70_r4_2
B12-binding
Sigma70_r4
HTH_40
GlnR_1st
HTH_10
DUF4330
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AVI68357
LinkDB
All DBs
Position
complement(4985399..4986034)
Genome browser
AA seq
211 aa
AA seq
DB search
MFKILHWIVVSRSQVLMELLAGRWPQEFLVKLTQVSPDEMCEKIKDNNASMVVIDLATVD
LQKAHQFQRLLAREQPSVRVVYLQFPKQVDARFLMQAATTAGVFYLDAGLTEISLGLSNI
LRGHRVIPIQLINGVNDDFGLFEDTEPLTIREREVLQALLTGSTNLDIANQLFVSESTIK
THLYRVFRKIGVSSRGQAIAWAQTYLHDVVV
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaaatattacattggattgtagtgtcacgatcgcaagtattgatggaattgctc
gcaggacgttggccgcaggagtttctcgttaagttgacccaagtcagccctgatgagatg
tgtgagaaaatcaaagataataatgcctccatggtcgtgatcgatttagcgactgttgat
cttcaaaaagcccatcaatttcaacgtttacttgcccgtgagcaaccgagtgtgcgggtt
gtctatttgcagttccctaaacaagtggatgcacgttttttaatgcaagctgccacaact
gcaggggtgttttatcttgatgcaggtttaactgaaataagcctaggactctcgaatatt
ttacgaggtcatagggtcatcccaattcagctcattaatggggtaaatgatgattttgga
ttgttcgaggacactgaaccgttaactatccgtgagcgtgaagtattacaagcattgttg
acgggaagtactaatttagatatcgccaatcagttgtttgtcagtgaaagcacgataaaa
acccatttgtaccgagtattccgtaaaattggagtgtctagccgtggtcaagcgattgcg
tgggcacaaacctatttgcacgatgtggtggtttaa
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