Shewanella sp. WE21: CKQ84_22875
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Entry
CKQ84_22875 CDS
T05404
Symbol
ltrA
Name
(GenBank) group II intron reverse transcriptase/maturase
KO
K00986
RNA-directed DNA polymerase [EC:
2.7.7.49
]
Organism
shew
Shewanella sp. WE21
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
CKQ84_22875 (ltrA)
Enzymes [BR:
shew01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.49 RNA-directed DNA polymerase
CKQ84_22875 (ltrA)
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Gene cluster
GFIT
Motif
Pfam:
RVT_1
RVT_N
GIIM
RdRP_1
Erythro-docking
Motif
Other DBs
NCBI-ProteinID:
AVI68445
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All DBs
Position
5099508..5100980
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AA seq
490 aa
AA seq
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MMASNEVSAPPDNAQWQSINWKAVKQHVLKLQMRIAKATREGKHGKAKALQWILTHSTSA
KLLAVKRVSQNKGSKTPGIDGIIWNSDARCMTAVNQLSRKGYHAKPLRRIYIPKKNGKLR
PLGIPCMIDRAQQALHLLALEPISETVADLNSYGFRPNRSAADAIAQCFKCLCMKRSSQW
VLEGDIKACFDKIGHQWLIDNIQLDKRMLKQWLGCGYVDKGLFYKTAEGTPQGGISSPTL
MLLTLAGLEQLVKSIACKTGNRVNFIGYADDFVITGSSKEVLVNEIKPQLIGFLKERGLT
LSDEKTHITHIDDGFDFLGFNIRKYNGKLLIKPSKSNVLSFLSNLREFIRKHPTIPVNDL
IKILNPKLRGWANYYRHSVAKQVFGYVGHQLFWLLRRWAVRRHPTKSKDWVRRKYYMNRI
GGWQFHGWQKIANMDCHFNLVQIAQTLIKRHVKIRSAAIPYDPEYEAYLSKRKQAKEGRN
SWFDPVLAAM
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttcaaacgaagttagtgcacctcctgacaatgctcaatggcaatccattaac
tggaaggcggttaagcaacatgtattaaagcttcaaatgcgcattgcaaaagcaacccga
gaaggtaaacacggcaaggcgaaagcattgcagtggatattaacccactctacatcagca
aaattgcttgctgttaaaagagtttctcaaaataaaggcagcaaaacaccagggatcgac
ggcattatttggaatagtgatgctcgttgtatgactgcggtgaatcaactgagccgaaaa
ggctatcatgccaaaccgctcaggcgtatctacatccccaagaaaaacggcaaactcaga
cctttaggcataccctgcatgatagatagagcgcagcaagcgcttcatcttctcgccttg
gagcctatttcggaaacggtggccgacctcaatagctatggctttcgacctaaccgaagc
gcagcagatgcaattgcacagtgcttcaaatgtttatgtatgaagcgctctagccaatgg
gttcttgagggtgacatcaaagcttgtttcgataagataggtcatcaatggctcatcgac
aacattcaattagataagcgaatgctgaaacaatggcttggatgtggttatgttgataaa
ggattgttctacaaaacagcagaaggaacaccgcaaggcgggataagctccccaacgctg
atgttgctcacgctggctgggttagaacaattggttaagtctattgcctgtaaaacaggt
aatagagtcaactttatcggatatgcagacgattttgttatcacaggttcttcgaaggaa
gtgctcgttaatgaaatcaagccgcaactaattggttttctaaaggaaagaggcttaaca
ctctctgatgagaaaacgcacataactcatatcgatgatgggtttgactttctgggattc
aatatcaggaagtacaacggcaaactgctcattaagccgagcaagagcaacgttctatca
tttttgagtaatctacgtgaattcatcagaaaacatccaacaatccccgttaacgattta
atcaaaatattgaatccgaaactgagaggatgggcgaactattatcgccacagtgttgca
aagcaagttttcggttatgtagggcatcaacttttctggttgttacggcgttgggccgtt
aggcgtcatccaactaaaagtaaggactgggtgaggcgtaaatactatatgaatcgcata
ggaggatggcaatttcacggttggcagaaaatcgccaacatggactgccattttaatctg
gttcagatagctcaaacgctgataaagagacatgtgaaaatcaggagcgcagccatacct
tacgaccccgaatacgaagcttacttaagtaagcggaaacaggcaaaggaaggtcgaaac
tcttggttcgatcctgtcttagctgctatgtag
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