Shewanella sp. WE21: CKQ84_23060
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Entry
CKQ84_23060 CDS
T05404
Symbol
msbA
Name
(GenBank) lipid A export permease/ATP-binding protein MsbA
KO
K11085
ATP-binding cassette, subfamily B, bacterial MsbA [EC:
7.5.2.6
]
Organism
shew
Shewanella sp. WE21
Pathway
shew02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
CKQ84_23060 (msbA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shew02000
]
CKQ84_23060 (msbA)
Enzymes [BR:
shew01000
]
7. Translocases
7.5 Catalysing the translocation of carbohydrates and their derivatives
7.5.2 Linked to the hydrolysis of a nucleoside triphosphate
7.5.2.6 ABC-type lipid A-core oligosaccharide transporter
CKQ84_23060 (msbA)
Transporters [BR:
shew02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
CKQ84_23060 (msbA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_29
AAA_22
RsgA_GTPase
DEAD
ABC_ATPase
nSTAND3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AVI68474
LinkDB
All DBs
Position
complement(5131394..5133202)
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AA seq
602 aa
AA seq
DB search
MTTSPKDEMWTVFKRLLGYIKQMKGMFMLSVAGLIIYGLVDAAFIAFIGPFIDKGFSGGA
PAAVTNGIALPTSEGFHANNDVLMMAPLVVIVMFSLRGFANFVSTYGISYMSARLIMDMR
QQVFEHYLSLPVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDSVTVFGMLVLMF
YNSWKLSLCILVIGPIMGMVIAVVSRRFRKVSKQIQTAMGGVSATTEQMIKGHKNVLAFG
GQETEATRFAKVNDQNRHQNMKLAVAQAISQPLIMIIGSFALAFVLYAASLDSMKADLTA
GTFATILGAMMAMLQPIKNLTRVNAEFQRGIAACTTVFELLDTLPESDTGTYTVERAKGH
LRFDNVCFTYDSQDRRALENVDFEVKPGQTLALVGRSGSGKSTIASLVTRFYTGLESGDI
LLDDVSIYDYSLKSLRNQVALVSQQVTLFNDTIANNIAYAYPGEATREQIIEAATLAYAM
EFIDQLPQGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQ
KGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHQSLLELDGMYAKLYQMQF
GS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatctcctaaagacgaaatgtggacagttttcaaacgattactgggctatata
aaacagatgaaaggcatgtttatgctttcagttgcgggattaattatttatggtctcgtc
gatgccgcctttatcgctttcatcggcccctttattgataagggtttctccggcggcgca
cctgctgcggtgaccaacggcatcgcattgccaaccagtgaaggtttccacgcaaacaac
gacgtgcttatgatggcgccgcttgtggttatcgttatgttttccctacgtggctttgct
aactttgtttcgacttacggcatttcatatatgagtgcacgtttgatcatggacatgcgt
cagcaagtgtttgagcattatctgagcctgcctgtcagttatatggataaggaaaatacc
ggtaacttgatctcaaaagtgacttttgatactgagcaaatcgctcgagcatcgggaagt
gctttgatttccatcgtccgcgatagtgtgactgtgtttggtatgctggtgctgatgttc
tataactcttggaagctatccctctgtattcttgtgattggtcctatcatgggcatggtc
attgcggtggttagtcgtcgtttccgcaaggtctctaagcaaattcaaacagccatgggc
ggggtgagtgcgactacggagcaaatgattaaaggccataaaaacgtattggcctttggt
ggacaggaaaccgaagcaacccgttttgctaaagtaaacgatcaaaaccgccatcaaaat
atgaagttagctgtggcacaagccattagtcagcctctgatcatgattatcggctcattc
gccttagcctttgtactttatgcggcaagcttagacagcatgaaagccgatcttaccgcg
ggtaccttcgcgacgattcttggtgccatgatggccatgttacaacccatcaaaaactta
acccgagtgaatgctgaatttcaacggggtattgcggcttgtaccacagtgtttgaatta
ctggatacgctgccagagtccgatacgggaacttatactgtcgagcgtgctaagggtcat
ctacgttttgacaatgtgtgttttacctatgacagccaagatcgtcgtgcacttgagaat
gttgattttgaagtcaaacctgggcaaaccttagccttagttggacgttctggctcaggt
aagtcgactattgcgagtttagtgacccgtttttatactggccttgaatccggcgatatt
ctgcttgatgacgtcagcatctacgattactcgctaaaatcgctgcgcaatcaagtggca
ctggtatcgcaacaggtgaccttgttcaatgacacgatagccaataacatcgcttacgcc
tacccaggtgaagccactcgtgagcagatcattgaagctgcgaccttggcctatgcgatg
gagtttattgatcaactgccccagggccttgatacccaagtgggtgagaatggcgtgtta
ttgtccggtggtcaaagacagcggattgcgattgcgcgcgctatgttgcgtgatgcgccc
gtgttgatcctcgatgaagcgacctccgcactggatactgagtcagaaaaagccattcaa
aaagggttagataacctcagacaaaaccgcacatctgtagtgatcgcccacaggttgtcg
accatcgagagtgccgatcagattttagtagtcgatcaggggcgtatcgtcgagcgcggg
acgcaccaatcactattggaattagatggcatgtacgccaaattataccaaatgcaattt
ggtagttag
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