Shewanella sp. WE21: CKQ84_23200
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Entry
CKQ84_23200 CDS
T05404
Name
(GenBank) chromosome segregation protein SMC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
shew
Shewanella sp. WE21
Brite
KEGG Orthology (KO) [BR:
shew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shew03400
]
CKQ84_23200
DNA repair and recombination proteins [BR:
shew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CKQ84_23200
Archaeal homologous recombinant proteins
CKQ84_23200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
GTP_EFTU
cobW
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AVI68501
LinkDB
All DBs
Position
complement(5158484..5161540)
Genome browser
AA seq
1018 aa
AA seq
DB search
MRPLSLSMSAFGPFASIQQLDFTALGTNPLFLINGPTGAGKTTLLDGICFALYGKTTGNE
REGSQMRCDMADDSLLTEVTFSFQLGNCSYRIRRVPEQDRVKKSGDGSTVQKPEAQLYKI
DAAGNESLLVASKVSEATAEIEALTGLDVEQFRQVMVLPQGKFRELLMADSKARELIFSQ
LFQTHIYRRIEDSLKSKAADIRALVKDQRSRRDGILQSAGLASDDELSCELAKLTPELET
AQSAKEQALQQQQWVIKTSDAAQHLLAEFVQFDALTQTVAALDAQQENMAAQTYKLNLAK
QAQHLAPMLEVFVAREQEAKAASLALEHAKTALTNAKKAFDNAELKAADLPVLEASLLEQ
EQVKQQLNALGPQLRELDRLNKTLEQEQTELISAKTQLQNSKNELTTAVQKRRELESALP
QLQANSETRLSLQQAHQQQQQLLSTYQQWQQVAARVSSTQAKLVEAKVKGRQLSAQHQQA
QVAYKALLLTWHQGQAAILARQLQQDEPCPVCGSQTHPQPAQSQELLPSDEALQLALEAE
TNAQEILSKARAEYRGLQTQLETLQQQAQDLAVQLGTAVDIPLDEHTHTLSQYAFSLTQA
EQAHQQLQLLQQEITLLHAQETHLQQKLEQGQTHDSALQSKVDLLQGQLAHMQQSVPSAL
ATLEALTAAIAQNQQSISQIKQQITSVRDLQQQTGQSFVAAKAALNGAENAAEAALAQQT
RAQQQLNQQLVAAGFADQQALFEAMLDEEQQRALASEIEAYQQRSALTKAQCEQLALKLK
DKVPPDSIKLAAELEFAQQALHAAEQAWQLLHTRTVLLMQTQTQLSIADAKAKVLEDEYA
VIGTLADVANGNTGNKISLQRFVLSVLLDDVLLEASHRLHLMSKGRYRLLRKEDRAKGNK
ASGLELEVEDAYTSKVRPVATLSGGESFMAALSMALGLSDVVQAYAGGIKLDTLFIDEGF
GSLDQDSLELAIRTLMDLQSSGRMIGVISHVSEMKEQINTRIDINKTSHGSEMTIVLP
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgagaccacttagcctttccatgtcagcctttggcccctttgcatcgattcaacaactt
gattttacggccttggggactaatccgttatttttgattaatggacccactggtgcgggt
aagacgaccttgctcgatggtatttgctttgctctctatggcaaaaccactggtaatgag
cgtgaaggcagccagatgcgctgcgatatggccgatgatagtctgctaacagaagtcact
tttagttttcagttgggtaattgcagttatcgtattcgccgtgtgccagagcaagacagg
gttaaaaaaagcggtgacggctcaacggtgcagaagcccgaagcacagttatataagata
gacgccgcgggtaatgaaagtttgcttgtagcgagcaaagtctctgaggcaaccgctgag
attgaagccttaactggcctcgatgtggagcagtttcgccaagtgatggtgttgccgcag
gggaaatttcgcgaattgttaatggcagactccaaagcaagagaactgatatttagtcag
ctatttcaaacgcatatataccgacgtattgaagattccttaaaaagtaaggctgcagat
atccgcgccttagtgaaagatcaacgcagccgccgtgatggcattttacaaagtgcgggt
ttagcatccgatgacgagcttagctgtgaattagccaagcttacgccagaacttgaaaca
gcccaaagtgcgaaagaacaggcattacagcagcaacaatgggtgataaaaaccagcgat
gccgcccagcatttattggccgaatttgtgcagtttgatgccttaactcaaacggttgct
gcgcttgatgcacagcaagaaaacatggctgcgcaaacctacaaactgaatttggctaaa
caggcgcagcacttggcacccatgcttgaggtgtttgtggcccgtgagcaggaagccaag
gcggcaagtcttgcccttgaacatgcgaaaacagcattaactaatgctaaaaaagccttc
gataacgcagagcttaaggctgctgatttgcccgtgttggaagcgtcgttacttgaacag
gaacaggttaaacagcaactgaatgccttagggccgcagctcagggaattggataggctt
aataaaacccttgaacaagagcaaacggagctcattagcgcgaaaacacaacttcagaac
agcaaaaatgagttaaccaccgcagtccaaaaacgccgtgaattggaatccgctctgccg
caactacaggccaatagcgaaactcgcctctcattgcaacaagcgcatcagcagcaacag
cagttattgtctacctatcagcaatggcaacaagtggcggcaagggtatcgtcgacacag
gcaaaacttgttgaggctaaagtcaaagggcgacaactcagtgctcagcatcagcaagca
caggttgcatataaagccttattgttgacttggcatcaagggcaggccgctattttagcg
cggcaattacagcaagatgaaccttgccccgtttgtggcagccaaacacatccacagcca
gcacaaagccaagagctactcccaagtgatgaagcgctgcaattagcactagaggctgaa
acgaatgctcaagaaatcctgagcaaagccagagcggaatatcgtgggctacaaacgcag
ttagaaaccttgcaacagcaagcacaagatctcgcggtccaattgggcactgcggttgat
attcctttagacgaacatacacataccttgtcgcaatacgctttctcactcactcaagcg
gagcaagcccatcagcagttacagctgttacagcaagagattacattgttgcacgcacag
gaaacgcatctacaacaaaagctagagcaaggacaaacacacgacagtgcactgcaatct
aaagtggatctattgcaggggcagttagcgcacatgcagcaaagtgttccatctgcgctt
gcaacgcttgaggccttaactgcagcaatcgcgcaaaatcagcaaagtatcagccaaatt
aagcaacagatcactagtgttagggatctccaacaacagactggccaatcttttgttgcg
gctaaagcggcacttaatggtgctgaaaatgctgctgaggcggcattagcccagcaaacg
cgtgcacagcagcaactcaatcagcaattagtcgcagcaggttttgccgatcaacaggcc
ttatttgaggccatgctggatgaagaacaacagcgtgcattagccagcgaaattgaggct
taccagcagcgcagtgctttgaccaaggcacagtgcgagcagttagcgcttaagcttaaa
gataaagtgccacctgatagcattaagctggctgctgagcttgagttcgcgcagcaagca
ttacacgcagcagagcaggcatggcagttgcttcacacgcgcacagtattactgatgcaa
acccaaacccagctgagtattgccgatgcaaaagctaaggttttggaagatgaatatgcg
gttatcggcacccttgccgatgtcgctaatggaaatacaggtaataagatcagtctgcaa
cgttttgtgttaagcgtactgcttgacgatgtgttgttagaggcaagccacaggctacac
ctaatgagcaaagggcgttatcgtttactacgtaaggaagatagggccaagggcaacaaa
gcttctgggctcgaattagaagtagaagatgcttatacctccaaagtgcgtcctgtggcc
accttaagcggtggtgaaagttttatggcagcattatctatggcgttaggcctatctgat
gtagtgcaagcctatgcaggtggtattaaactcgatactttatttatcgatgaaggcttt
ggcagtttagatcaagattctttagaactggccattcggaccctgatggatttgcaatcc
tctggccgcatgataggggtgatctcgcacgtgtcggaaatgaaagagcagataaatacc
cgcatcgacatcaataaaacctcacatgggagcgaaatgacgatagttttgccttag
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