KEGG   Shewanella sp. YLB-09: FS418_04175
Entry
FS418_04175       CDS       T11533                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
shey  Shewanella sp. YLB-09
Pathway
shey03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shey00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FS418_04175 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shey03021]
    FS418_04175 (rho)
   03019 Messenger RNA biogenesis [BR:shey03019]
    FS418_04175 (rho)
Transcription machinery [BR:shey03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     FS418_04175 (rho)
Messenger RNA biogenesis [BR:shey03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     FS418_04175 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT Spore_III_AA AAA Mor
Other DBs
NCBI-ProteinID: QFU21140
LinkDB
Position
complement(997348..998613)
AA seq 421 aa
MNLSELKDTSISDLVKLAQEMKVENTARARKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSGDASYLAGPDDIYVSPSQIRRFSMRTGDTIFGKIRPPKEGERYFALLKVSEVN
YDKPENSRTKILFENLTPLHAEERMRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPP
KAGKTLLLQNMAQSITYNNPDVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEFGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTPDELQKMWILRKILNPMDEVTGMEFLIDKLAMTKTNEDFFKAMKRAK
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttatcagaattaaaagatacgtcgatttcagacttagtaaagctcgcccaagag
atgaaagttgagaatacagcccgcgcacgtaagcaggacattattttctctatcctcaaa
gcccacgccaaaagcggtgaagatattttcggtggcggagtattagaaattctacaagat
ggattcgggttcctccgcagtggtgatgcatcttaccttgcaggtcctgatgatatctat
gtttcccctagccagatccgtcgcttcagtatgcggaccggtgataccatcttcggaaaa
atcagaccacctaaagaaggcgaacgttatttcgcacttctaaaagtctctgaagtcaac
tatgacaagcctgaaaattctcgtacaaaaattcttttcgaaaacttaaccccactacat
gcagaagaacgtatgcgcatggaacgtggtaatggttcaacagaagatattacttcacga
attctcgatctatgttcgccaattggtaaaggtcaacgtggtttgattgttgctccgcca
aaagcaggtaagacattactgcttcagaacatggctcaaagcatcacctacaacaaccca
gacgtagttttaatggttctgcttattgatgagcgtccggaagaagtgaccgagatgcag
cgcatggtaaaaggtgaagtgattgcttctaccttcgatgagccagcgagtcgtcacgta
caagtagccgaaatggttattgaaaaagctaagcgccttgttgagcacaagaaagacgtg
gttattctgcttgattcaatcactcgtcttgcacgtgcatacaacacagtgatcccatca
tcaggtaaggtacttactggtggtgtcgatgctaacgcactacaccgtcctaaacgtttc
ttcggtgcagctcgtaatattgagttcggtggtagcttaacaattatcgctacagcattg
gttgataccggttctaagatggatgaagtcatctacgaagaatttaaaggtacaggtaac
caagagttacacctttctcgcaaagctgctgaaaagcgtgttttccctgccatcgacttt
aaccgctcaggtacacgtcgtgaagagaagttaaccacgccggatgagctacagaagatg
tggatcctacgtaagatacttaatcctatggatgaagtgactggtatggaattccttatc
gataaattggcaatgaccaagactaacgaagatttcttcaaagcgatgaagcgcgctaag
acttaa

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