Shewanella sp. YLB-09: FS418_06955
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Entry
FS418_06955 CDS
T11533
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
shey Shewanella sp. YLB-09
Pathway
shey02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shey00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FS418_06955 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shey03021
]
FS418_06955 (rpoD)
Transcription machinery [BR:
shey03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FS418_06955 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3391
FAP206
Motif
Other DBs
NCBI-ProteinID:
QFU21636
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All DBs
Position
complement(1654793..1656631)
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AA seq
612 aa
AA seq
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MISMEHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDADQIEDIVQMINDMGIRVYE
QAPDADEIMMSEDSTDDDAAEEAAAALATVEAELGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEEGINTVQASVAEYPPAIATILDQFDRYEAEEVRLSDIISGFVDPNADDVAPTA
THVGSELSDEELDDEDGDDDEEEEEEGPKGPDPEESKERFTQLRQVHENTLKIIADKGRG
HPEATVALFEIGELFKEFRLMPKQFDRLVKSMRATMDKVRIQERLIMKLCVEQAKMPKKN
FVKGYTADESSIAWFDAELATKKPYVEGLQMVEHDVRRCRAKLDIIERETGLAIAAIKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATGESLK
NATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEILKSFLDE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgatatctatggagcacactcctcagtcgcaacttaaattgttgctagccaaaggtaaa
gagcaaggctacttaacctatgcagaagtgaatgatcacttgcctgcagatatggtcgac
gcagaccagatcgaagatattgtccagatgataaatgacatgggtattcgcgtctacgaa
caggcgccggatgctgatgaaatcatgatgtctgaagacagcaccgatgacgatgctgca
gaagaagccgctgctgcgctagcaacggtagaggccgagcttggtcgtacaaccgatcca
gtccgtatgtatatgcgtgaaatgggtactgttgaacttcttacccgtgaaggcgagatc
gttatcgctaaacgtatcgaagaaggaatcaataccgttcaggcatcggtcgctgagtat
cctccagcgattgctacgatccttgatcagttcgatcgctatgaagctgaagaagtccgt
ctgtcggatattatctcaggcttcgtcgatcctaatgctgatgatgtagcaccgactgca
acacacgtcggttctgagctctctgatgaagagctagatgatgaagatggtgatgatgat
gaagaagaggaagaggaaggtccaaaaggtccagatcctgaagaatctaaagagcgtttc
actcagctaagacaagttcatgagaatacgctgaagatcatcgctgacaaaggacgtggt
catcctgaagcaaccgttgccctatttgagattggtgaactatttaaagagttccgtctc
atgcctaagcagttcgaccgcttagttaagagcatgcgcgccaccatggataaagtccgt
attcaagaacgtttgattatgaagctttgtgtcgaacaagctaagatgcctaagaaaaac
ttcgttaagggttataccgccgacgaaagtagcatagcttggtttgatgccgaactcgcc
actaagaaaccttatgttgaaggtttacagatggtcgagcatgatgttcgtcgttgtcgc
gccaagctagatattatcgaacgagaaactggtcttgcgattgctgctatcaaagatatc
aaccgtcgtatgtctatcggtgaagctaaggctcgccgtgcaaagaaagagatggtagaa
gcgaacttacgtctagtaatttctatcgctaaaaagtacaccaaccgtggtctacagttc
ttggatcttatccaagaaggtaacatcggcctaatgaaggcggttgataagtttgaatac
cgtcgtggttataagttctcgacttatgcaacttggtggatccgccaggcgatcactcgc
tctattgctgaccaagcaagaacgatccgtattccagtgcatatgattgaaacaatcaac
aagctgaatcgtatttctcgtcaaatgctacaggaaatgggccgtgagccaactcctgaa
gaactggctgagcgtatgctgatgcctgaagataagatccgtaaagtattaaagatcgcc
aaagagcctatctcaatggaaacaccaatcggtgatgacgaagattcgcacttaggtgac
tttatcgaggatactaccctcgagctacctttagactcagccactggcgaaagtttgaag
aacgcaacacacgaagtacttgcaggcctaacggctcgtgaagctaaagtattacgtatg
cgtttcggtatcgacatgaacacagatcacacgcttgaagaagttggaaagcagtttgac
gtaacgcgtgagcgtattcgtcagattgaagctaaggcactgcgtaagctacgtcaccct
tctcgctcagagatcttgaagtcattcttagacgaataa
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