Shewanella sp. YLB-09: FS418_12740
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Entry
FS418_12740 CDS
T11533
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
shey Shewanella sp. YLB-09
Pathway
shey03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FS418_12740 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shey03400
]
FS418_12740 (uvrB)
DNA repair and recombination proteins [BR:
shey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FS418_12740 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FS418_12740 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_22
Kinesin
Ish1
Motif
Other DBs
NCBI-ProteinID:
QFU22659
LinkDB
All DBs
Position
3006063..3008078
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AA seq
671 aa
AA seq
DB search
MTESSFRLESQYSPAGDQPKAIAQLVDGIKSGLACQTLLGVTGSGKTFTIANVIKQMARP
TIIMAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNAHI
EQMRLSATKALLERTDVVLIASVSAIYGLGDPESYMKMLLHLRQGDFMGQRDILLRLSEL
QYKRNDIALDRGTFRVRGEVIDIFPADSDRNAIRVELFDDEIERLSLFDPLTGHIIKRIA
RITVYPKSHYVTPREKILAATEEIKEELRERKQQLLDNNKLIEAQRISERVQYDLEMMVE
LGYCSGIENYSRYLSGRATGEGPPTLLDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKS
NLVEYGFRLPSALDNRPLKFEEFENLMPQTIYVSATPSQYEIEKCDGEIAEQVVRPTGLL
DPEVEVRPVGIQVDDLLSEIGKRIKVNERVLVTTLTKRMSEDLSEYLDEHGIKVRYLHSD
IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTM
GRAARNINGKVILYADRITKSMAAAMGETERRRKMQHQFNLDNGITPTGVVKKITDVMDV
GERDKGILGDYRSLNVAENKAKYVVQDVASLSHQIDALEKQMHEHAKNLEFEQAAAVRDQ
ASLLREAMIKA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaatccagttttcgactcgaatcacaatattctccagcgggtgatcagccaaaa
gccatagctcaattagtcgacggcataaagtcagggcttgcgtgccagacgttgttggga
gtgacgggctcaggtaagactttcacgattgcgaatgtcattaagcagatggcacgtcct
acaattatcatggcacctaataagacattagcggctcagctatacggtgagatgaaagag
tttttccctcataatgcggttgaatactttgtttcttattatgattattatcaacctgaa
gcttatgtcccctctaccaatacatttatagagaaagatgcatctgttaatgcgcatatt
gagcagatgagattatctgcaactaaggcattactagaaagaacagatgtggtgttaatc
gcatctgtttcggcgatttatggattaggcgatcctgagtcctatatgaagatgctgctt
catttgaggcaaggtgactttatggggcaaagagatatcctgcttaggctcagtgaattg
cagtataaacgtaatgacatcgctttagatcggggcacgtttagggttagaggagaggtg
attgatatttttcctgctgactcagatagaaatgctatacgtgttgaactgttcgatgat
gaaatagagcgcttgagtctgtttgatccattaacaggccatatcattaagcgtatagcc
agaataactgtttatcccaagagtcactatgttacgcctcgcgaaaaaatccttgctgca
acagaggagataaaagaggaactaagagagcgtaaacaacaattattagataacaataag
ctcattgaggcgcagcgtatctctgagcgggtacaatacgacttagagatgatggtagaa
ctaggttattgttctggcatcgaaaattactcacgttatctttcaggaagagcgacaggt
gaggggcctccgacattgctcgattaccttccagatgatggactgcttattattgatgag
tctcatgtcactgtgcctcaaatcggtgctatgtacaaaggtgatcgttctaggaaatca
aacttagttgaatacggtttcaggctaccttctgcactcgataatcgcccgcttaagttt
gaagagttcgaaaacttaatgccgcaaaccatctacgtgtcagcgacgccgagtcaatat
gagattgaaaaatgtgatggtgagattgctgagcaagtggttaggcctacgggattactc
gatcctgaagttgaagtcaggcctgtggggatacaggtcgatgatctgctttctgaaata
ggtaaaagaattaaggtcaatgagcgggtgttggtcacgacgctaacgaaacgcatgtcg
gaagatttaagtgaatatttagacgagcatgggatcaaggtaaggtatctgcattcagat
atcgatacggttgaaagagtagagattattcgtgatcttcgtttgggagtcttcgatgtt
ttggtcggtattaacctactgcgtgaaggcttggatatgcctgaagtatcactggtgtgt
attctggatgcggataaagagggcttcttacgttccgagcgttccttaattcagactatg
ggccgtgcagcccgaaatatcaatggcaaggtgatactgtatgctgaccgcatcactaaa
tctatggcggcagccatgggggaaacagagcgacggcgtaaaatgcaacatcaattcaat
ctcgataatggtattactcctacaggtgtggtgaagaagatcaccgatgtgatggatgtt
ggagagcgagataaggggatcttaggtgattatcgcagtctaaacgttgcagaaaacaag
gccaaatatgtcgttcaggacgtggcaagcttgagtcatcaaattgatgctttagagaaa
cagatgcatgaacatgcaaaaaaccttgaatttgaacaggctgcggcagtgcgtgatcag
gcttctctacttagagaagcaatgataaaggcctaa
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